Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq391 111 4e-19 seq2525 104 6e-17 >seq391 Length=62077 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||||||||| || |||||| ||| || |||||||| || ||||||||| Sbjct 24413 TTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTC 24354 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||| || ||||| || | ||| || ||||||||| | |||||||||||| || || Sbjct 24353 GTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGTT 24294 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 | || |||||||| || |||||| Sbjct 24293 AACGTTTTGACGAAAATTTGCATT 24270 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| ||||||||| ||||| || || ||||| || ||||| | | Sbjct 21301 CCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGTT 21242 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||||||||| |||| ||| || || ||||| | |||||| || || ||||||| | Sbjct 21241 TTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAAA 21182 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| Sbjct 21181 GTTTTAACGAAGATTTGCAT 21162 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||||| ||| || ||| || || |||||||||||||| ||||| Sbjct 22796 TTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAATTTTT 22737 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||| |||||||| || | || || || ||||| | |||||| || ||||| ||| Sbjct 22736 GTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGTC 22677 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | || |||||||| |||||||| Sbjct 22676 AACGTTTTGACGAAAATCTGCAT 22654 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || ||||| ||||| || |||||| ||||| |||||||||||||||||| || Sbjct 22189 TTACCAGCGAAAATCAGGCGTTGTTGA---TCTGGAGGGATTCCTTCTTTATCCTGAATC 22133 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || | ||| || || || || | ||| || || || || || ||||| ||||| || Sbjct 22132 TTGGTTTTAACATTCTCAATCGTATCCGACGGCTCAACCTCAAGGGTGATAGTCTTGCCA 22073 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| ||||||||| || || ||||| Sbjct 22072 GTCAAAGTCTTGACAAAAATTTGCAT 22047 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||| || |||||| || || ||||||||||| ||||| || Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||| |||||||| |||| |||| || || || || | |||||| || ||||| ||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | || |||||||| || ||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| || | ||| |||||| || || || ||||| || || || ||| Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTTC 22451 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||| ||||| || || | |||| || ||| ||||| | ||||||||||| || ||| Sbjct 22450 GTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGTC 22391 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | ||| |||||||| || ||||| Sbjct 22390 AAAGTTTTGACGAAAATTTGCAT 22368 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| | ||| || ||| ||| || |||||||| ||||||||||| | Sbjct 23768 CCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGTC 23709 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | || || ||| ||||| ||||| || || || || ||||| Sbjct 23708 TTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAGC 23649 Query 288454 GTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||| Sbjct 23648 GTTTTGACAAAAATTTGCAT 23629 >seq2525 Length=27391 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| ||||||||| | || |||||||| || || |||||||| | | Sbjct 2827 CCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTT 2886 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||||||||| || | || | ||| ||||| | ||||||||||| ||||||| | Sbjct 2887 TTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAA 2946 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| Sbjct 2947 GTTTTCACGAAGATTTGCAT 2966 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| ||||||||||||||| ||||| ||||||||||| ||||| || | Sbjct 5545 CCCGCGAATATCAGACGCTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGGTC 5604 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | ||| | ||| || || ||||| || || || ||||| || Sbjct 5605 TTGACGTTTTCGATGGTATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGAGC 5664 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || || || || ||||| Sbjct 5665 GTTTTCACAAAAATTTGCAT 5684 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||| || ||||||||| || |||||||||||||| || |||||| Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTC 4149 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | || || || || |||| ||| || || ||||| | ||| || || || |||||| Sbjct 4150 GTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTC 4209 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || || || || || || |||||| Sbjct 4210 AGCGTTTTAACAAAAATTTGCATT 4233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178709195645086