Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3755 102 8e-17 seq2525 89.7 5e-13 seq4826 86.0 6e-12 >seq3755 Length=20876 Score = 102 bits (112), Expect = 8e-17 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 132858 TCGTCTCTTGATATAAGCTCGTTGCTGAACGTGAGGCCGGGCATGATGCCTT-TTGTTTT 132916 || || || |||||||||||||| |||||||| | ||||||||||| ||| || |||| Sbjct 10526 TCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGGGCATGAGGCCCCGTTTTTTT 10467 Query 132917 AATAAAAAATATTGCCGCAAAACTGCCCGAAAAGAACACGCCTTCTACAATTGCAAAAGC 132976 || ||||| || | ||| ||||| ||||||||||| | |||||| || || ||||| Sbjct 10466 AACCAAAAA-ATCGACGCGAAACTACCCGAAAAGAATATGCCTTCGACGGCGGCGAAAGC 10408 Query 132977 CACCA 132981 ||||| Sbjct 10407 CACCA 10403 >seq2525 Length=27391 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| | ||||| || ||||| || || |||||||| ||||| || || Sbjct 3616 CTTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTT 3675 Query 64360 TTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 |||||| || | || || |||| || ||||||| ||| | || ||||||| Sbjct 3676 GGTCTTTACGTTTTCGATCGTGTCCGACGGC-TCGACTTCTAAAGTGATCGTTTTGCCGG 3734 Query 64419 TCAAAGTTTTTACGAAAATTTGCATT 64444 ||| ||||||||||||||||||||| Sbjct 3735 TCAGGGTTTTTACGAAAATTTGCATT 3760 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | || || ||||| || || || |||||||||||||| ||||| ||||| Sbjct 4089 CTTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTT 4148 Query 64360 TTGCTTTACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 ||| ||| || | || || |||| || ||||| | || | ||| || |||| Sbjct 4149 CGTCTTGACATTGTCGATAGTGTCGGACGGC-TCGACTTCCAACGTAATGGTTTTACCGG 4207 Query 64419 TCAAAGTTTTTACGAAAATTTGCATT 64444 ||| ||||| || |||||||||||| Sbjct 4208 TCAGCGTTTTAACAAAAATTTGCATT 4233 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 ||||| || || || ||||||||||| || ||||| ||||| || || || | Sbjct 2842 CGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTTTTCACGTTTTCGATC 2901 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || || || || ||||||| ||| | |||||||||||||||||||| ||||| ||| Sbjct 2902 GTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAAGTTTTCACGAAGATT 2961 Query 64439 TGCAT 64443 ||||| Sbjct 2962 TGCAT 2966 >seq4826 Length=16944 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||||| | ||| | ||||| ||||| || ||||||||||||||||| | Sbjct 6822 CCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGAT 6881 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| | ||| || ||||| |||| || || || || || ||||| Sbjct 6882 AGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGGG 6941 Query 64337 ATTCCTT 64343 || |||| Sbjct 6942 ATGCCTT 6948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499254221414280