Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4826 93.3 4e-14 seq391 84.2 2e-11 seq2525 82.4 8e-11 >seq4826 Length=16944 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 || ||| || ||||| ||||| || ||||| | | |||||||||||||||||||| || Sbjct 6818 GCCGCCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATC 6877 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 | | ||||| ||| || | |||||||||| | |||||||| ||||| ||||| Sbjct 6878 GGATAGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGG 6937 Query 138504 AGGTATACCTT 138514 ||| || |||| Sbjct 6938 AGGGATGCCTT 6948 >seq391 Length=62077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 138472 TTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531 ||||||| | |||| ||| ||||| ||||||||||| || |||||||| ||| | || Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTC-TTGAATCTT 22452 Query 138532 TG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | ||||| | || | ||| |||| || ||||| || | || | ||| || || || Sbjct 22451 CGTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGT 22392 Query 138591 CAGAGTTTTTACAAAAATCTGCATG 138615 || |||||| || ||||| |||||| Sbjct 22391 CAAAGTTTTGACGAAAATTTGCATG 22367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT- 138540 |||| | ||| || || ||||| || || |||||||| || ||| |||||||||| | Sbjct 22786 AGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCC-TGAATTTTTGTTTTGACG 22728 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | || |||||| || | ||| | ||||| || |||| ||||| Sbjct 22727 TTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGTCAACGTTTTG 22668 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 22667 ACGAAAATCTGCATG 22653 >seq2525 Length=27391 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 138472 TTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT 138531 ||||| | | | || | ||||||||| || || || || ||||||||||| ||| | || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTC-TTGAATCTT 3675 Query 138532 TGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 || |||| | ||| | ||||| | || ||| || || | || | |||||| || || Sbjct 3676 GGTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGT 3735 Query 138591 CAGAGTTTTTACAAAAATCTGCAT 138614 ||| |||||||| ||||| ||||| Sbjct 3736 CAGGGTTTTTACGAAAATTTGCAT 3759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495874465478640