Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq391 91.5 1e-13 seq2525 87.8 1e-12 >seq391 Length=62077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 || ||| | ||||| |||||||| ||| || || || ||||| || ||||||| || Sbjct 21301 CCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGTT 21242 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || || |||| |||||||| || || ||||| || ||||||||||| |||| | Sbjct 21241 TTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAAA 21182 Query 15157 GTTTTTACAAAAATTTGCAT 15176 ||||| || || |||||||| Sbjct 21181 GTTTTAACGAAGATTTGCAT 21162 >seq2525 Length=27391 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||||||||||||| ||| || || ||||| ||||| ||| ||| Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | ||||| |||| || || || || || ||||| || || ||||| || ||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| ||||||||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCAT 3759 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 15052 CGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATA 15111 |||||||| || ||||||||||| || || |||||| | || ||| | || ||| Sbjct 4108 CGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTCGTCTTGACATTGTCGATA 4167 Query 15112 GTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15171 || ||| || || || || |||||||||||||| ||||| ||||| ||||||||| Sbjct 4168 GTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTCAGCGTTTTAACAAAAATT 4227 Query 15172 TGCAT 15176 ||||| Sbjct 4228 TGCAT 4232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 || ||| | ||||| |||||||| || ||||||||||||||||| |||||| || Sbjct 2827 CCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTT 2886 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || || |||| || || || ||| || ||||| || || || || || |||| | Sbjct 2887 TTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAA 2946 Query 15157 GTTTTTACAAAAATTTGCATA 15177 ||||| || || ||||||||| Sbjct 2947 GTTTTCACGAAGATTTGCATA 2967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357119606651045