Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2525 96.9 3e-15 seq4826 91.5 1e-13 seq391 84.2 2e-11 >seq2525 Length=27391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| | ||||| ||||| |||||||| || ||||| || ||||| || || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | ||||| ||||||| ||||||||| | || | ||||||||||||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| ||||| ||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCAT 3759 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||||||||| ||||| || || || || |||||||| |||||| Sbjct 2827 CCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTT 2886 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | ||||| ||||||| || ||||| | || | ||| |||||||||| | Sbjct 2887 TTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAA 2946 Query 127094 GTTTTTACAAAAATCTGCAT 127113 ||||| || || || ||||| Sbjct 2947 GTTTTCACGAAGATTTGCAT 2966 >seq4826 Length=16944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| ||||||||||||||||| | || ||||| |||||||| ||||||||| Sbjct 6822 CCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGAT 6881 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || | |||||| || ||| | || | || || ||||| ||||| Sbjct 6882 AGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGGG 6941 Query 127007 ATGCC 127011 ||||| Sbjct 6942 ATGCC 6946 >seq391 Length=62077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| ||||||| || |||||||| || || ||||| || || ||| ||| ||| Sbjct 22796 TTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCC-TGAATTTT 22738 Query 127031 TGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 || || || | ||||| ||||| | ||| ||||| | || | ||||| || || Sbjct 22737 TGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGT 22678 Query 127090 CAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || |||||||||||| Sbjct 22677 CAACGTTTTGACGAAAATCTGCATG 22653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475129095080880