Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq391 105 6e-18 seq2525 104 2e-17 seq6174 96.9 3e-15 seq4713 95.1 1e-14 >seq391 Length=62077 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| |||||||| ||||||||||||||||||||||| ||||||||| Sbjct 22796 TTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAATTTTT 22737 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | ||||| || | ||| ||||| | || | ||||| || || Sbjct 22736 GTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGTC 22677 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || ||||| ||||| Sbjct 22676 AACGTTTTGACGAAAATCTGCAT 22654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | || || |||||||| || || |||||||||||||| || || |||||| Sbjct 23768 CCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGTC 23709 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | ||||| || | |||||||| || || | ||||| || || || Sbjct 23708 TTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAGC 23649 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| |||||||||||||| Sbjct 23648 GTTTTGACAAAAATTTGCAT 23629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| |||| || ||||| || ||||| || ||||| ||||| |||||||| || Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTTC 22451 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | ||| ||||| | || ||||| | || | ||| ||||| || Sbjct 22450 GTTTTTA-CGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGT 22392 Query 45317 TAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 | |||||| || ||||||||||| ||| || || Sbjct 22391 CAAAGTTTTGACGAAAATTTGCATGCCGCCACGAA 22357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| ||||| || |||||||| ||||||||||||||||| || || ||| | | Sbjct 21842 ATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTGGTTTTTACGTTT 21783 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | || ||||| | |||||| || | || | ||||| || || | ||||| || Sbjct 21782 TCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTCAAGGTTTTGACG 21723 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 21722 AAAATTTGCAT 21712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 24413 TTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTC 24354 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | |||||||| | || ||||| | || | ||| ||||| ||| Sbjct 24353 GTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGTT 24294 Query 45318 AGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 | ||||| || ||||||||||| ||| || Sbjct 24293 AACGTTTTGACGAAAATTTGCATTCCGCCAC 24263 >seq2525 Length=27391 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || || || ||||||||||| |||||||||||||||||||| |||| || | Sbjct 4108 CGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTCGTCTTGACATTGTCGATA 4167 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 |||||||| | ||||||||| | |||| ||||| ||||| || ||||| ||||||||| Sbjct 4168 GTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTCAGCGTTTTAACAAAAATT 4227 Query 45336 TGCAT 45340 ||||| Sbjct 4228 TGCAT 4232 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| || || || || ||||| ||||||||||| |||||||| || || | | Sbjct 3629 ATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTGGTCTTTACGTTT 3688 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||||| || | ||||||||| | ||| | |||||||||||| || |||||||| Sbjct 3689 TCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTCAGGGTTTTTACG 3748 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 3749 AAAATTTGCAT 3759 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| |||||| || || || || ||||| ||||||||||||||||| || || Sbjct 5545 CCCGCGAATATCAGACGCTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGGTC 5604 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | ||| || |||| || || || || |||| ||||||||||| || Sbjct 5605 TTGACGTTTTCGATGGTATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGAGC 5664 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| |||||||||||||| Sbjct 5665 GTTTTCACAAAAATTTGCAT 5684 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | ||||| |||||||| || || || || || ||||| ||||||||||| | Sbjct 4430 CCTGCGAAAATCAAACGTTGCTGATCGGGTGGGATACCCTCTTTGTCTTGAATTTTCGTT 4489 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 |||| || | || | || ||||| | ||| ||||| | || | ||||||||| || | Sbjct 4490 TTGA-CGTTCTCGATCGTATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTCAA 4548 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 ||||| |||||||||||||| Sbjct 4549 CGTTTTGACAAAAATTTGCAT 4569 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274 |||||||| || ||||| ||||||||||| ||||||| | ||||| | || | || | Sbjct 5269 CGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAA-TCTTTGTCTTCACGTTCTCAAT 5327 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 ||||| || | |||||||| | |||| || || || || |||||||| || ||||| Sbjct 5328 TGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCGTGAGAGTTTTCACGAAAAT 5387 Query 45335 TTGCAT 45340 |||||| Sbjct 5388 TTGCAT 5393 >seq6174 Length=13620 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/153 (75%), Gaps = 5/153 (3%) Strand=Plus/Plus Query 124004 CGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACT-TGCGAAAATTCACGGCG 124062 ||||||||||||||| || |||||||| || || |||||||| | |||||| | |||| Sbjct 11886 CGAAACAATTTATTATGGAGCTTTGGAAGCTAGTTGCGAACTGTCCGAAAAGT-TCGGCA 11944 Query 124063 CGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGA 124122 | || |||| ||||| || ||| |||| ||| | |||||||| ||| ||||||| Sbjct 11945 CTTATGAAACTTACGAAGGTTCCCCCATTAGCCAAGGCACTTTGCAGTTCGATATGTGGA 12004 Query 124123 ATGCTACACCGAC---AAATTTGTGGGACTGGA 124152 ||| | |||||| ||| | ||||| |||| Sbjct 12005 ATGTAAAACCGACTTTAAAAATTTGGGATTGGA 12037 >seq4713 Length=17327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||| | ||| | ||| |||||| || || ||||||||||| |||||||| |||||||| Sbjct 3243 ATTTTAGAAGCTCAAACCGAAACAGGCACTCCGTACATGCTTTACAAAGATGCCTGCAAT 3184 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 |||| ||||||||| || || ||||| ||||||||| ||| ||| | |||||| Sbjct 3183 TCGAAATCCAATCAGAAAAATTTAGGAACCATAAAATGTTCCAATTCTTGTACGGAAATT 3124 Query 123708 ATCGA 123712 |||| Sbjct 3123 GTCGA 3119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/153 (74%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 124004 CGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACT-TGCGAAAATTCACGGCG 124062 ||||||||||||||| | |||||||| || || |||||||| | |||||| | |||| Sbjct 2655 CGAAACAATTTATTATGCAGCTTTGGAAGCTAGTTGCGAACTGTCCGAAAAGT-TCGGCA 2597 Query 124063 CGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGA 124122 | || |||| ||||| || ||| |||| ||| |||||||| | || ||||||| Sbjct 2596 CTTATGAAACTTACGAAGGTTCCCCCATTAGCCAAGGCATTTTGCAATTTGATATGTGGA 2537 Query 124123 ATGCTACACCGAC---AAATTTGTGGGACTGGA 124152 ||| | |||||| ||| | ||||| |||| Sbjct 2536 ATGTAAAACCGACTTTAAAAATTTGGGATTGGA 2504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451649863448520