Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2525 113 1e-19 seq391 86.0 1e-11 >seq2525 Length=27391 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||||||||| ||||| ||||| || || || |||||| || ||||||||| | Sbjct 5254 CCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCTTTGTC 5313 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| || | ||||| | || ||| || |||||||| || ||||| ||||||||| Sbjct 5314 TTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCGTGAGA 5373 Query 199610 GTTTTCACAAAAATTTG 199626 |||||||| |||||||| Sbjct 5374 GTTTTCACGAAAATTTG 5390 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||| ||||| || ||||| || ||||| |||||||||| || ||||| || Sbjct 4089 CTTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTT 4148 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || |||| ||||| | | || || |||||||| || || ||||| || Sbjct 4149 CGTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGT 4208 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||||||||| Sbjct 4209 CAGCGTTTTAACAAAAATTTG 4229 >seq391 Length=62077 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| | ||| ||||| || || ||| |||||| ||||| || ||| | Sbjct 23768 CCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGTC 23709 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || ||| ||||| ||||| | | ||| || |||| ||| || || || ||||| || Sbjct 23708 TTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAGC 23649 Query 199610 GTTTTCACAAAAATTTG 199626 ||||| ||||||||||| Sbjct 23648 GTTTTGACAAAAATTTG 23632 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| |||||||| || | ||| || || |||||| || || ||| || |||||||| Sbjct 22511 CTTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTT 22452 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || ||| |||| ||| || | | ||| || ||||| ||||||||||| ||||| Sbjct 22451 CGTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGT 22392 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||| || |||||||| Sbjct 22391 CAAAGTTTTGACGAAAATTTG 22371 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 199483 CTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAAT 199542 || ||| || |||||||| | ||| ||||| ||||| ||| |||||| |||||||| Sbjct 22800 CTTCTTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAAT 22741 Query 199543 CTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACC 199602 ||| || ||| ||||| ||||| | | || || ||||||||||| || || || Sbjct 22740 TTTTGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCC 22681 Query 199603 CGTGAGAGTTTTCACAAAAATTTG 199626 ||| | ||||| || ||||| || Sbjct 22680 CGTCAACGTTTTGACGAAAATCTG 22657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177976982804979