Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3755 235 5e-57 >seq3755 Length=20876 Score = 235 bits (260), Expect = 5e-57 Identities = 275/369 (75%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| ||||| || || || ||||| ||||| |||||||||||||||||||| ||||||| Sbjct 10528 CCTCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGGGCATGAGGCCCCGTTTTT 10469 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | |||||| || | |||||||| ||||||||||| | ||| |||||||| ||||||| Sbjct 10468 TTAACCAAAAAATCGACGCGAAACTACCCGAAAAGAATATGCCTTCGACGGCGGCGAAAG 10409 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 |||||| || ||||||||||| | || ||| ||| ||||| || ||||||| | Sbjct 10408 CCACCAAACGTTCGCCGAACGTCGATTGTTTATCGGCAATCCATTTCAAAGCCCATTGAG 10349 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156 | || | || ||||| || | ||||| || || || || | || ||| || || Sbjct 10348 CTTTCTTTTGAACGCAAGGTAAAGTTTCTATAGCATTGAAAA----GATGATCTTTTTCG 10293 Query 133157 A--GGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212 | ||| ||| | |||||| |||||||| ||||||||||| || || | || || Sbjct 10292 ACGGGATCGCGAATGTAGGTTTCGATGAGTAAGGAATACATTTCGGAATGGATATTTTCG 10233 Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272 || || ||||||||||| ||||| || || || || || ||||||||||||| || Sbjct 10232 ATTGCAATTTGAAAGCCATAAAAACAACGAGCTTCCGTAACTTGCACTTCTTGAGAAAAT 10173 Query 133273 CGCTCGACC 133281 || ||||| Sbjct 10172 CGACCGACC 10164 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||| || ||||| ||||||||||| ||||| ||||| ||||| | ||| ||||| | Sbjct 9520 CACTTCTTCGACTGTCCAAAACGAAGCCTCCGCTTTCTTGTAAAATTCCCAAATGTCGGG 9461 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAA 133499 ||||| || |||||||| || || || || || ||||||||||| Sbjct 9460 ATATTCGATCGGAAAAATGACGAATCGACGCGGATTTTCGCGCAA 9416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499781808670080