Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1616 116 1e-20 seq391 96.9 1e-14 seq4816 95.1 5e-14 seq7576 89.7 2e-12 seq2525 86.0 2e-11 seq4826 84.2 9e-11 >seq1616 Length=34801 Score = 116 bits (128), Expect = 1e-20 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279 ||||| || || |||||||| | |||||||||||||| | ||| |||| ||||||| Sbjct 20412 AAAGGCGAGACGAAAACTTTCACGCCTGAAGAAATTTCGGCCATGATTCTAGGTAAAATG 20471 Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339 |||||| || ||||||||| | || || || | | ||||| | || || ||| Sbjct 20472 AAAGAAGTTGCTGAACAATATTTGGGCAAACCGGTCAACAAAGCAGTTGTCACCGTACCC 20531 Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTT 451398 || |||||||| ||||| ||||| ||||| || ||||| || ||| ||| || ||||| Sbjct 20532 GCATATTTCAACGATGCTCAACGTCAAGCGACAAAAGACGCCGGAGTTATCGCCGGTTT 20590 >seq391 Length=62077 Score = 96.9 bits (106), Expect = 1e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||||| || ||||| || ||||| ||||| | || Sbjct 22047 ATGCAAATTTTTGTCAAGACTTTGACTGGCAAGACTATCACCCTTGAGGTTGAGCCGTCG 22106 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | ||||| || ||||| ||||| |||||||| ||||| |||||| Sbjct 22107 GATACGATTGAGAATGTTAAAACCAAGATTCAGGATAAAGAAGGAATCCCTCCAGATCAA 22166 Query 391170 CAACGTTTAATTTTCTCAGGGAA 391192 ||||| | |||||| | || || Sbjct 22167 CAACGCCTGATTTTCGCTGGTAA 22189 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||||||||| |||| |||||||| || || | || ||||| | ||| Sbjct 21162 ATGCAAATCTTCGTTAAAACTTTGACCGGTAAAACCATCACGTTAGAAGTTGAGCCGTCT 21221 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | ||| ||||||||||||||||| || || || || |||||| Sbjct 21222 GATACTATCGAAAACGTGAAAACCAAAATTCAAGATAAGGAGGGTATCCCGCCCGATCAA 21281 Query 391170 CAACGTTTAATTTTC 391184 || || || || ||| Sbjct 21282 CAGCGCTTGATCTTC 21296 Score = 84.2 bits (92), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| ||||||| |||||||| || | || || || | || Sbjct 21712 ATGCAAATTTTCGTCAAAACCTTGACTGGGAAAACTATCACGTTGGAGGTCGAGCCGTCC 21771 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | ||| || || |||||||| ||||| || || || |||||| Sbjct 21772 GATACTATTGAAAACGTAAAAACCAAGATCCAAGATAAAGAAGGCATACCGCCGGATCAA 21831 Query 391170 CAACGTTTAATTTT 391183 ||||| || ||||| Sbjct 21832 CAACGCTTGATTTT 21845 >seq4816 Length=16977 Score = 95.1 bits (104), Expect = 5e-14 Identities = 176/250 (70%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACT-AAAAT 451278 ||||| ||| ||| ||| ||| ||||||||||| | |||||| ||| | ||||| Sbjct 10655 AAAGGCGAAGTCAAACGATTTTTTCCCGAAGAAATTTCCGCCATGGTT-TTAGTGAAAAT 10597 Query 451279 GAAAGAAACAGCAGAACAATATATTGG--TTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 | |||||||| || | | |||| ||| || | ||||| || | ||||| Sbjct 10596 GCGGGAAACAGCCGAGGCGT-TCTTGGGCAAATCC-GTCAAAGATGCTGTCGTCACTGTA 10539 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || |||||||| || ||| | ||||| ||||| || ||||| || || || || || Sbjct 10538 CCGGCTTATTTTAACGATTCGCAACGACAAGCCACCAAAGACGCTGGTACGATCGCAGGC 10479 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGA 451456 || |||||||| || || || |||||||| || || || ||| | || ||||| || ||| Sbjct 10478 TTGAATGTTCTGCGTATCATAAATGAACCGACGGCGGCCGCTATTGCCTATGGTCT-GGA 10420 Query 451457 AAATCAAAAG 451466 || ||||| Sbjct 10419 TAA--AAAAG 10412 >seq7576 Length=11147 Score = 89.7 bits (98), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || ||||||||||| ||| | ||||| || || || |||||||| || ||| Sbjct 3881 ACAGTACCGGCTTATTTCAACGATTCGCAACGTCAGGCCACCAAAGATGCCGGTACCATT 3822 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || || || |||||||| || ||||| || ||||| |||||||| ||| | || || || Sbjct 3821 GCCGGCTTGAATGTTCTACGTATTATCAACGAACCGACAGCAGCGGCTATTGCGTACGGT 3762 Query 451451 CT 451452 || Sbjct 3761 CT 3760 >seq2525 Length=27391 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| |||||||| ||||| |||||||| ||||| | || || || | || Sbjct 4233 AATGCAAATTTTTGTTAAAACGCTGACCGGTAAAACCATTACGTTGGAAGTCGAGCCGTC 4174 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | | || |||||||||||||| ||||||||||| || ||||| Sbjct 4173 CGACACTATCGACAATGTCAAGACGAAAATTCAAGATAAAGAAGGAATTCCGCCGGATCA 4114 Query 391169 ACAACGTTTAATTTT 391183 ||| || |||| || Sbjct 4113 ACAGCGCCTAATCTT 4099 >seq4826 Length=16944 Score = 84.2 bits (92), Expect = 9e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| |||| |||||||||||||| ||||| || ||| | || Sbjct 7337 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACTATTACCCTTGAAGTCGAACCGTCA 7278 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGG 391153 |||| || ||| | | || ||||||||||||||| ||||| Sbjct 7277 GATACGATCGAAAATGTCAAGACAAAAATTCAAGATAAAGAAGG 7234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974135345135996