Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq7576 131 1e-24 seq7320 123 2e-22 seq4816 122 7e-22 seq2901 105 5e-17 >seq7576 Length=11147 Score = 131 bits (144), Expect = 1e-24 Identities = 254/372 (68%), Gaps = 5/372 (1%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||||||||| ||||||| ||| || || || ||||| || ||||| | | |||| Sbjct 3751 TTTTTATCAAGACCGTACGCAATAGCCGCTGCTGTCGGTTCGTTGATAATACGTAGAACA 3810 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | || ||||| | || |||||||| ||||| || | ||| |||||||| ||||| Sbjct 3811 TTCAAGCCGGCAATGGTACCGGCATCTTTGGTGGCCTGACGTTGCGAATCGTTGAAATAA 3870 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || | ||||| || | |||| ||||| | |||| || |||| Sbjct 3871 GCCGGTACTGTGACGACGGCGTCTTTCACTTGCTTACCGAGGAAAGCCTCGGCAGTTTCG 3930 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTT 518404 |||||| ||||| ||| | ||||| || ||| || ||| |||| ||| Sbjct 3931 CGCATTTTCACTAAAACCATGGCGCTAATTTCCTCGGGGAAAAATTTTTTGGCTTCGCCC 3990 Query 518405 TGATATGAT--ACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGT 518462 | | || | ||||| | | ||||| || | | ||||| ||||| ||||| | Sbjct 3991 T--TGTGCTCGACTTCGATTTTGGGTTTGCCGCCGTCGCTGATAACCTTAAACGGCCAAT 4048 Query 518463 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 518522 |||||| || ||||| || | ||| | ||| | ||| ||||| ||||| |||| Sbjct 4049 GTTTCATGTCGGATTGGACCGTGGCGTCTTCGAAACGGCGACCGATTAACCGTTTAGCAT 4108 Query 518523 C-AAAAATAGTA 518533 | | |||| ||| Sbjct 4109 CTACAAATGGTA 4120 >seq7320 Length=11514 Score = 123 bits (136), Expect = 2e-22 Identities = 297/446 (67%), Gaps = 9/446 (2%) Strand=Plus/Minus Query 518273 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTT-CTTTACCAATATAAGC 518331 || || || || || |||||||| || || |||||| ||| ||| |||| || | Sbjct 907 TCATTGAAGTAGGCCGGAACAGTGATTACTGCATCACGGACTGACTTGCCCAA---AAAC 851 Query 518332 GCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATAT 518389 |||| || |||| ||||||||| | |||| ||| | |||| ||| || | || Sbjct 850 GCTTCAGCAGTTTCTTTCATTTTGATCAAAACCATGGCACTGATTTCTTCAGGAGCGAAT 791 Query 518390 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC---ATTAATA 518446 || || ||| || | || |||||| || | ||||| |||| | ||| | | Sbjct 790 TGTTTCCTTTCGCCTTTAAATTCTACTTCTAATTTCGGTTTTCCACCACCGCCATTGACA 731 Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 ||||| || ||||||| ||||| || ||| || | | || | || | | ||| Sbjct 730 ACTTTGAACGGCCAGTGTTTCACGTCGTTTTGCACTGATGGATCGTCGAACTTCCGACCG 671 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || || ||||| |||||||||||||| || ||||| || |||||| |||||| Sbjct 670 ATCAAACGTTTGGCATCAAAAATAGTGTTTTCGGGATTGCGGGCCACTTGATCTTTGGCC 611 Query 518567 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 518626 |||| || |||| | |||| ||||| || ||||| || || || || Sbjct 610 CCATCGCCGATCAAACGTTCGACGTCTGTGAAACCCACATAGCTGGGCGTCGTTTTGTTG 551 Query 518627 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 518686 || || || || || |||||||||||||| ||||| | || || || ||||| || Sbjct 550 CCCTGGTCGTTGGCGATAATTTCAACTTTGCCATTCAAAAAGACTCCAACGCAACTGTAA 491 Query 518687 GTTGTTCCTAAATCAATACCAATAGC 518712 || || || ||||| ||||| || || Sbjct 490 GTCGTCCCCAAATCGATACCGATGGC 465 >seq4816 Length=16977 Score = 122 bits (134), Expect = 7e-22 Identities = 252/370 (68%), Gaps = 5/370 (1%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| |||||||| |||| ||| || || || |||||||| || || | || |||| Sbjct 10414 TTTTTATCCAGACCATAGGCAATAGCGGCCGCCGTCGGTTCATTTATGATACGCAGAACA 10473 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | || || || | || || ||||| |||||||||| ||| |||||||||||||| Sbjct 10474 TTCAAGCCTGCGATCGTACCAGCGTCTTTGGTGGCTTGTCGTTGCGAATCGTTAAAATAA 10533 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTT 518342 || || ||||| | || ||||| | || ||| || | | || ||| | || |||| Sbjct 10534 GCCGGTACAGTGACGACAGCATCTTTGACGGATTTGCCCA-AGAA-CGCCTCGGCTGTTT 10591 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCAT 518402 |||||| ||||| ||| | ||||||| ||| || || || | ||| ||| Sbjct 10592 CCCGCATTTTCACTAAAACCATGGCGGAAATTTCTTCGGGAAAAAATCGTTTGACTTCGC 10651 Query 518403 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGT 518462 || | | || || | | |||||| || | || || || || ||||| | Sbjct 10652 CTTTGTGTTCGACCTCGATTTTCGGTTTACCGCCTTCCGATATCACCTTGAACGGCCAAT 10711 Query 518463 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 518522 |||||| || | || |||| | | |||| ||| | ||||| | ||||| |||| Sbjct 10712 GTTTCATGTCAGCTTCAACAGTAGGATCATCGAAACGACGGCCAATCAGACGTTTCGCAT 10771 Query 518523 C-AAAAATAG 518531 | ||||||| Sbjct 10772 CTGAAAATAG 10781 >seq2901 Length=25133 Score = 105 bits (116), Expect = 5e-17 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 668856 GTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGTA 668915 ||||||||||||| ||| | || ||||||||||| |||||||||||| | || ||||||| Sbjct 11688 GTAAAGAAGGTCGAATTCGTGGCAATTTGATGGGTAAACGTGTCGATTTTTCGGCACGTA 11629 Query 668916 CAGTTATTACTTCTGATCCCAATATTGCT-CTCAATGAAGTTGGTGTTCCTCTTATTATT 668974 | |||||||| | ||||| ||| ||| | | || |||| |||||||| | ||| Sbjct 11628 CTGTTATTACGCCCGATCCGAAT-TTGATGATTGATCAAGTCGGTGTTCCACGATCTATC 11570 Query 668975 GCTAAAAATCTTACTTT 668991 ||| ||||| | ||||| Sbjct 11569 GCTCAAAATTTGACTTT 11553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777719108063122