Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7320 168 8e-37 seq7576 167 3e-36 seq4816 127 3e-24 seq6174 91.5 2e-13 seq4713 84.2 3e-11 >seq7320 Length=11514 Score = 168 bits (186), Expect = 8e-37 Identities = 703/1086 (65%), Gaps = 39/1086 (4%) Strand=Plus/Minus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 |||||| || || || || | ||||| || ||||| ||||| ||||| || | || Sbjct 2072 CTTTTCGTCCTCTTCCTTGAATTTTTCAGCTTCTTGAACCATGCGATCAATTTCGACCTT 2013 Query 6625 CGATAATC-TCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTAT 6683 ||||||| ||| | | || || | || || ||||| | |||||| || | || ||||| Sbjct 2012 GGATAATCGTCCACGT-TCGTTTTTGATGGTGATCTTGTTGGATTTTCCAGTGGACTTAT 1954 Query 6684 CTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTG 6743 | || | || | | || ||| ||||||| || || | || | ||||| | Sbjct 1953 CACATGCTGTGACGTGTAGGATTCCACAGGCATCAATGTCAAAACCAACCTCGATTTGAG 1894 Query 6744 GTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTAT 6803 | ||| | || || | |||||||||||| | ||||| || || | ||| |||| | Sbjct 1893 GCACACCACGAGGAGCTGGTGGAATACCCGTCAGTTCAAAAGTGCCCAATAAGTTGTTGT 1834 Query 6804 CCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTT 6863 | | | | | |||||| |||||||| ||||| | || || |||||||| || ||| Sbjct 1833 CTTTAGTCATTGCACGTTCGCCTTCATACACTTTGACAGTGACAGCAGGTTGGTTGTCTG 1774 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGAT-GGAATCGTCGTATTTCTCGGAATAACC 6922 || | ||| |||| ||| | | | | || || | || | | | |||| Sbjct 1773 AGAAGGTCGTGAAAGTTTGA-CTTGCATGGTTTGGTATGCGAGAGTTGC---GTACAACC 1718 Query 6923 GG---GGTCATAATACCACCCATAGTTTCGA-GTCCAAGAGACAGAGGTGTCACGTCCAA 6978 | |||||| | || || |||||||| | ||||| || ||||||||||| |||| Sbjct 1717 AGCTTGGTCATCACTCCTCCAGCAGTTTCGATGCCCAAG-GAAAGAGGTGTCACATCCAC 1659 Query 6979 GAGTAACAGGTCTTGAACAGATTCGTTCCCTTCAC-CCGTTAAG-ATGGCGGCTTGGACC 7036 || || || |||| ||||| | || | | || || | || | || ||||| || Sbjct 1658 AAGCAATAGATCTTTAACAGCATTGT--CTTGAACTCCACTGAGTACTGCAGCTTGCACT 1601 Query 7037 GTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTA 7096 | || || || || || || ||||| ||||| || | ||| |||||||| || || Sbjct 1600 GCTGCTCCATAGGCAACAGCTTCATCCGGGTTGATGGAGCAATTGAGTTCTTTGCCATTG 1541 Query 7097 AAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACG 7156 ||||||||| || | | ||| | || |||| || || || || |||| || Sbjct 1540 AAATAATCCTTCAATAGCTTTTGGACACGTGGAATTCTGGTTGAACCTCCAACCAGTACA 1481 Query 7157 ATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 ||||| | | |||||| || || | ||| || || | |||| ||| || || ||| Sbjct 1480 ATTTCGTGGATTTTCGACTTGTCCAACTTGGAATCCCTCAGTGCACGTTCCACTGGCTCC 1421 Query 7217 ATACATTTACGGAACAAGTCCAT-ACACAGTTCCTCAAAACGTGCACGGGTAATG--GAT 7273 | | || ||||| |||| || ||| | ||| ||||| | || | ||||| | | Sbjct 1420 AAAGTCTTGCGGAA-AAGTTCACCACAAATTTCGTCAAATCTAGCTCTCGTAATTTTGCT 1362 Query 7274 GTATAGAAA-TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGA 7332 || |||| || | || ||| | | || | ||| | || | | || | || Sbjct 1361 GT---GAAAGTCGATCCCTTCGAAAAGACTGTCCACTTCGAGGGCCGCCTCTG---TGGA 1308 Query 7333 A---GATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGG 7389 | || || || | || || | ||||| || || || | ||| | | || | Sbjct 1307 ACTGGACAAGGTCCTTTTGGCCCTTTCACAGGCTGTCCGCAGACGCCTCAATGCTCTAAC 1248 Query 7390 GTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAG 7449 || | ||||| || || || ||||| ||||| | ||| || || || Sbjct 1247 ATTCTTCTTCAAGTCTTTGTTGTGCTTGCGTTTGAACTCCTGGACGAAATGGTCAACAAG 1188 Query 7450 TCTCGAAT---CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTC 7506 | ||| |||||||||||||||||| || || ||||| || || ||||| ||||| Sbjct 1187 ---CAAATTGTCGAAATCTTCACCACCCAGATGAGTGTCCCCAGCAGTGGCTTTCACTTC 1131 Query 7507 --AAAGA-TACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTC 7563 ||||| | ||| | |||||| | |||| |||||||||||| || || || |||||||| Sbjct 1130 GAAAAGACTGCCTTCATCAATGGTCAACACCGAAACATCAAATGTTCCTCCGCCCAGGTC 1071 Query 7564 AAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGC 7623 | | ||||||| ||| | ||| | | ||||| || | || || || | ||| || Sbjct 1070 ATAGATGAGTATATTCCTTTCGCCCTTGAGATTCTTGTCCAATCCATAGGCCAAAGCTGC 1011 Query 7624 CGCCGT 7629 ||||| Sbjct 1010 AGCCGT 1005 Score = 136 bits (150), Expect = 5e-27 Identities = 303/449 (67%), Gaps = 7/449 (2%) Strand=Plus/Minus Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 || || ||||||||||| || || | || || || |||| ||| || | | ||| | Sbjct 907 TCATTGAAGTAGGCCGGAACAGTGATTACTGCATCACGGACTGACTTGCCCAAAAACGCT 848 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | |||||||||||| | | |||||| | || ||||||| || || ||| Sbjct 847 TCAGCAGTTTCTTTCATTTTGATCAAAACCATGGCACTGATTTCTTCAGGAGCGAATTGT 788 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| |||| || ||||| || ||||| | | ||||| | || | || || ||| Sbjct 787 TTCCTTTCGCCTTTAAATTCTACTTCTAATTTCGGTTTTCCACCACCGCCATTGACAACT 728 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG-TCCGAAAACTTTCTTCCGAT 7941 || ||| ||| | ||||| |||| ||| | ||| ||| || ||||| | ||||| Sbjct 727 TTGAACGGCCAGTGTTTCACGTCGTTTTGCA-CTGATGGATCGTCGAACTTCCGACCGAT 669 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 | ||| || |||||||||| ||||||| ||| || ||| ||| | || ||| | Sbjct 668 CAAACGTTTGGCATCAAAAATAGTGTTTTCGGGATTGCGGGCCACTTGATCTTTGGCCCC 609 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGAT 8060 || ||||| | |||||| || || || | || || | |||| |||||| | Sbjct 608 ATCGCCGATCAAACGTTC---GACGTCTGTGAAACCCACATA-GCTGGGCGTCGTTTTGT 553 Query 8061 TCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAAT 8120 | || |||||||| || |||||||| || | | || |||| || ||||| | Sbjct 552 TGCCCTGGTCGTTGGCGATAATTTCAACTTTGCCATTCAAAAAGACTCCAACGCAACTGT 493 Query 8121 ACGTTGTTCCTAAATCAATACCGATTGCT 8149 | || || || ||||| |||||||| ||| Sbjct 492 AAGTCGTCCCCAAATCGATACCGATGGCT 464 >seq7576 Length=11147 Score = 167 bits (184), Expect = 3e-36 Identities = 231/321 (72%), Gaps = 3/321 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| ||||||||||| |||||||| || || ||||| || |||||||| ||| Sbjct 3751 TTTTTATCAAGACCGTACGCAATAGCCGCTGCTGTCGGTTCGTTGATAATACGTAGAACA 3810 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||| ||| ||||| || | |||||||| || || || |||||||||||||| || || Sbjct 3811 TTCAAGCCGGCAATGGTACCGGCATCTTTGGTGGCCTGACGTTGCGAATCGTTGAAATAA 3870 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || ||||| ||||| | |||| ||||||||| | | || || | || Sbjct 3871 GCCGGTACTGTGACGACGGCGTCTTTCACTTGCTTACCGAGGAAAGCCTCGGCAGTTTCG 3930 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 |||||| | |||||| | ||| || || | ||| | ||| | ||| || Sbjct 3931 CGCATTTTCACTAAAACCATGGCGCTAATTTCCTCGGGGAAAAATTTTTTGGCTTCGCCC 3990 Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 || || ||||| || ||||||| |||| | || |||||||||| ||| |||| Sbjct 3991 TTGTGCTCGACTTCGATTTTGGGTTT-GCCGC--CGTCGCTGATAACCTTAAACGGCCAA 4047 Query 7895 TCTTTCATATCGTCTTGGACC 7915 | |||||| ||| ||||||| Sbjct 4048 TGTTTCATGTCGGATTGGACC 4068 Score = 116 bits (128), Expect = 5e-21 Identities = 181/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || ||||| ||||||||||| || || | || |||| |||||||||||| || Sbjct 2896 GCTCCATAAGCGACGGCCTCATCGGGATTGATACTCTTGTTCAATTCTTTACCGTTGAAG 2955 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| |||| || ||||| ||| ||||| || || || ||||| || ||||||| Sbjct 2956 TAATCTTGCAACAATTTTTGAACTTTGGGGATACGAGTGGAACCACCCACTAAAACGACG 3015 Query 7160 TCATTCACTTTC-GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || || | | | | ||| || | || | ||| || | | ||||||||| || || | Sbjct 3016 TC-TTGAATGGCGGCTTTGTCTAGTTTGGCGTCACGTAAAGCTTTTTCGACCGGATCTAG 3074 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 | ||||| || || ||||||||| |||||||| || ||||| || | || || Sbjct 3075 AGTCGAGCGGAATAAATCAGAACACAGTTCTTCAAAACGGGCGCGGGTTATCGTGGTGTA 3134 Query 7279 GAAATCAACGCCGTCG 7294 |||| | ||| ||| Sbjct 3135 ATAATCGATGCCTTCG 3150 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||||||| || | ||||| | || |||||| || || || || ||||| | |||| Sbjct 5825 AAAACTGTATTGTGCGGGTTTAAAGCGACTTGGTTTTTGGCGGCATCTCCGATTAAACGT 5884 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 ||| | | | || || |||||||| || || || || || ||||||||||| ||| Sbjct 5885 TCAGTGT---CGGTGAAGGCGACGTAGCTAGGCGTAGTGCGGTTGCCTTGGTCGTTGGCA 5941 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 |||||||| || | ||| ||| | ||||| || || ||||| || || || || Sbjct 5942 ATAATTTCGACCTTGCCGTGTTGGAAAACGCCAACACAGCTGTACGTAGTGCCCAAGTCG 6001 Query 8138 ATACCGATTGC 8148 |||||||| || Sbjct 6002 ATACCGATAGC 6012 >seq4816 Length=16977 Score = 127 bits (140), Expect = 3e-24 Identities = 216/311 (69%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| ||||| || || ||||| |||||||| |||||||| || ||||| ||| Sbjct 10414 TTTTTATCCAGACCATAGGCAATAGCGGCCGCCGTCGGTTCATTTATGATACGCAGAACA 10473 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||| ||| || || || | || ||||| || ||||||||||||||||||||||| || Sbjct 10474 TTCAAGCCTGCGATCGTACCAGCGTCTTTGGTGGCTTGTCGTTGCGAATCGTTAAAATAA 10533 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || ||||| || || |||| || || | ||| || || | || Sbjct 10534 GCCGGTACAGTGACGACAGCATCTTTGACGGATTTGCCCAAGAACGCCTCGGCTGTTTCC 10593 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 |||||| | |||||| | ||||| ||||| | ||| |||| ||| || Sbjct 10594 CGCATTTTCACTAAAACCATGGCGGAAATTTCTTCGGGAAAAAATCGTTTGACTTCGCCT 10653 Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 || || || || || | |||||| |||| | | | || ||||| ||| |||| Sbjct 10654 TTGTGTTCGACCTCGATTTTCGGTTTA-CCGC--CTTCCGATATCACCTTGAACGGCCAA 10710 Query 7895 TCTTTCATATC 7905 | |||||| || Sbjct 10711 TGTTTCATGTC 10721 >seq6174 Length=13620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 105280 GTAAACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGG 105339 ||||| || | |||||| ||||| ||||| || |||| || || || | | ||| ||| Sbjct 10561 GTAAATTCGACAATTTCCGTACATAAATTGGAACATTTTATGGTTCCTAGATTTTTTTGG 10502 Query 105340 TTCGACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGG 105399 || || || ||| || || ||||||||||||||||| || || || ||||| |||| Sbjct 10501 TTAGATTTCGAATTGCAGGCATCTTTGTAAAGCATATACGGAGTGCCTGTTTCGGTTTGA 10442 Query 105400 GATTTAATAATTGCTTTCCA 105419 | || | ||||||| |||| Sbjct 10441 GCTTCTAAAATTGCTCTCCA 10422 Score = 89.7 bits (98), Expect = 7e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 104868 ATCCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATA 104927 || |||||||||||| || | | | |||| |||| || || || | | |||||||| Sbjct 12006 ATTCCACATATCGAACTGCAAAGTGCCTTGGCTAATGGGGGAACCTTCGTAAGTTTCATA 11947 Query 104928 AGGACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTC 104987 || ||| || |||||| ||||| || | ||| | | | | | || || ||||| Sbjct 11946 AGTGCCGAACTTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTCCATAATAAATTGTTTC 11887 Query 104988 GAATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGAT 105047 ||| || || |||| | || || ||||| ||| | || | ||| | || ||| Sbjct 11886 GAAAATTTCCTTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGGAT 11827 Query 105048 AAACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGA 105104 ||| | || || | |||||||||||| || |||||||||| ||||| |||| || Sbjct 11826 AAATGCATCGGCCAAACCCTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGA 11770 >seq4713 Length=17327 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 104463 TTGACTTTGGTCTATATACACACCTCTATCCGCCGCCATATCGATGATTGTTTTTTGACT 104522 |||| ||| |||||| | |||| | ||| || ||||||||||| || ||||||| | Sbjct 1983 TTGAGATTGATCTATAAAAGCACCCCGATCAGCTGCCATATCGATTATAATTTTTTGTTT 2042 Query 104523 CATTTCCCATACGGTTTTATACAATTCCTTAAGATCATCGGGTATATCAATAATGTTTTG 104582 |||||||| |||||||||||||| || || |||| || || || || || ||||| Sbjct 2043 GATTTCCCAGACGGTTTTATACAAGTCTTTCAGATTATGCGGAATTTCTTGGATATTTTG 2102 Query 104583 AACAGACCC 104591 || || || Sbjct 2103 TACGGAACC 2111 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 105279 CGTAAACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATG 105338 ||||||||| | |||||| ||||| |||| || |||| || || || | | ||| || Sbjct 3112 CGTAAACTCGACAATTTCCGTACAAGAATTGGAACATTTTATGGTTCCTAAATTTTTCTG 3171 Query 105339 GTTCGACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTG 105398 || || || ||| || || |||||||||||||| || || || || ||||| |||| Sbjct 3172 ATTGGATTTCGAATTGCAGGCATCTTTGTAAAGCATGTACGGAGTGCCTGTTTCGGTTTG 3231 Query 105399 GGATTTAATAATTGCTTTCCA 105419 | || | |||||| ||||| Sbjct 3232 AGCTTCTAAAATTGCCTTCCA 3252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634636308751080