Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2525 136 9e-27 seq391 125 2e-23 seq4826 89.7 1e-12 >seq2525 Length=27391 Score = 136 bits (150), Expect = 9e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| ||| ||||||||||| ||||| || ||||| || |||||||||||||||||||| | Sbjct 5249 GCTCACCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCT 5308 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 || ||| ||||||||||| ||||| || ||| ||||| | |||| |||||||| | Sbjct 5309 TTGTCTTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCG 5368 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | |||||| ||||| | |||||| Sbjct 5369 TGAGAGTTTTCACGAAAATTTGCAT 5393 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| ||| |||||||| | ||| ||||| || || ||||| ||||| |||||||| |||| Sbjct 2822 GCTAACCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTT 2881 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || ||||| || || |||||||| ||| ||||| | || | |||||| || | Sbjct 2882 TGGTTTTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGG 2941 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||||||||| ||||| | |||||| Sbjct 2942 TCAAAGTTTTCACGAAGATTTGCAT 2966 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| ||||| || || || ||||| || || || ||||||||||| ||||| || || Sbjct 5543 TACCCGCGAATATCAGACGCTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGG 5602 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||| || ||||| |||||| |||||| ||||| |||| || || || || | Sbjct 5603 TCTTGACGTTTTCGATGGTATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGA 5662 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||| || || | |||||| Sbjct 5663 GCGTTTTCACAAAAATTTGCAT 5684 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || | || ||||| || || || |||||||||||||||||||| || Sbjct 3616 CTTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTT 3675 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || || |||||||| || ||||| | || | ||| || || || Sbjct 3676 GGTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGT 3735 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||||||||||| | ||||||| Sbjct 3736 CAGGGTTTTTACGAAAATTTGCATT 3760 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| || || ||||| || || ||||| |||||||| ||||||||||| Sbjct 4089 CTTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTT 4148 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || || ||||| || || ||||| | |||| || || || || Sbjct 4149 CGTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGT 4208 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || | ||||||| Sbjct 4209 CAGCGTTTTAACAAAAATTTGCATT 4233 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||||||||| || | ||||| || || || || || || ||||||||||||||||| Sbjct 4428 TACCTGCGAAAATCAAACGTTGCTGATCGGGTGGGATACCCTCTTTGTCTTGAATTTTCG 4487 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||||| || || || || || ||||| | || | ||| || || |||| Sbjct 4488 TTTTGACGTTCTCGATCGTATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTCA 4547 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||||| Sbjct 4548 ACGTTTTGACAAAAATTTGCAT 4569 >seq391 Length=62077 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | |||||||| || ||||| ||||| |||||||||||||| || Sbjct 22511 CTTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTT 22452 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || |||||||| ||||| || || ||||||||| | ||| | |||||| || || Sbjct 22451 CGTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGT 22392 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||||||||| ||||| | |||||| Sbjct 22391 CAAAGTTTTGACGAAAATTTGCAT 22368 Score = 120 bits (132), Expect = 7e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | || |||||| || || || || ||||| |||||||||||||| Sbjct 17735 CTTACCGGCGAAAATCAATCTTTGTTGATCGGGCGGGATACCTTCCTTGTCTTGAATTTT 17676 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||| ||||||||| ||| ||||| | || | ||| |||||||| Sbjct 17675 AGTCTTCACGTTTTCAATCGTGTCCGAAGGTTCGACTTCTAACGTGATCGTTTTTCCTGT 17616 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| ||||| | ||||| Sbjct 17615 CAACGTTTTCACGAAAATCTGCAT 17592 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct 24414 CTTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTT 24355 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| ||||| || ||| ||||| | || | |||||| || || Sbjct 24354 CGTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGT 24295 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||||| ||||| | ||||||| Sbjct 24294 TAACGTTTTGACGAAAATTTGCATT 24270 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| |||||||| | ||||| || ||||| ||||||||||||||||| || ||||| Sbjct 23772 CTCACCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTT 23713 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||||||| || || |||||||| ||| ||||| || || | || ||||| || Sbjct 23712 TGTCTTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGT 23653 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | |||||| Sbjct 23652 CAGCGTTTTGACAAAAATTTGCAT 23629 Score = 104 bits (114), Expect = 5e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 || |||||| |||||||| | ||||| || || || |||||||||||||| || ||||| Sbjct 22800 CTTCTTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAAT 22741 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||| |||||||| || || ||||| || |||||||| | || | || || || Sbjct 22740 TTTTGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCC 22681 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| ||||| | ||||| Sbjct 22680 CGTCAACGTTTTGACGAAAATCTGCAT 22654 >seq4826 Length=16944 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||| |||||||||||| |||||| || || || || || || ||| |||||| Sbjct 7234 CCTTCTTTATCTTGAATTTTTGTCTTGACATTTTCGATCGTATCTGACGGTTCGACTTCA 7293 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || ||||||||||| ||||| | ||||| Sbjct 7294 AGGGTAATAGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 7337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108592621973879