Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3755 123 3e-23 seq4713 111 2e-19 seq6174 87.8 2e-12 >seq3755 Length=20876 Score = 123 bits (136), Expect = 3e-23 Identities = 258/383 (67%), Gaps = 1/383 (0%) Strand=Plus/Minus Query 18966 AAAATCACAATGTAGTC-CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 ||| ||| |||| | || |||| || || ||| | || ||| || || || || | Sbjct 10546 AAATTCAAAATGAACTCACCTCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGG 10487 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 |||| || || | |||||||||||| || || || || || || ||||||||||| | Sbjct 10486 GCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCGAAACTACCCGAAAAGAATATGC 10427 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 |||| || || || ||||| || | | ||| || | | | | |||| ||||| Sbjct 10426 CTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCGAACGTCGATTGTTTATCGGCAATCC 10367 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||||| ||||| | ||| ||||||| || || || | || ||||||| ||| || | Sbjct 10366 ATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGTAAAGTTTCTATAGCATTGAAAA 10307 Query 19205 GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 ||| || | | ||| || || | || || | ||| |||||||| | Sbjct 10306 GATGATCTTTTTCGACGGGATCGCGAATGTAGGTTTCGATGAGTAAGGAATACATTTCGG 10247 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 |||| |||||||| || || || ||||| || |||||||| | ||||| || | || | Sbjct 10246 AATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAACAACGAGCTTCCGTAACTTGCA 10187 Query 19325 CTTCACTACAAAATCTTTCGACC 19347 |||| | |||||| ||||| Sbjct 10186 CTTCTTGAGAAAATCGACCGACC 10164 >seq4713 Length=17327 Score = 111 bits (122), Expect = 2e-19 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 47514 ACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTA 47573 |||||||| | |||| |||| | ||| |||| || || || ||||| | || |||| | Sbjct 2533 ACATTCCACATATCAAATTGCAAAATGCCTTGGCTAATGGGGGAACCTTCGTAAGTTTCA 2592 Query 47574 TAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTT 47633 |||| ||| | || | ||||| ||||| |||||||| || |||||| |||||| Sbjct 2593 TAAGTGCCGAACTTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTGCATAATAAATTGTT 2652 Query 47634 TCAAATATTTTTATGTTTAGATT---CCTTGCTTCTGATGATTCAAAAGGATANNNNNNN 47690 || || |||| |||| | ||| || |||||| ||| |||||||| || Sbjct 2653 TCGAAAATTTCCTTGTTCA-ATTGAACC--GCTTCTTGTGAGTCAAAAGGGTATCTCATC 2709 Query 47691 NNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTA 47750 |||| ||| ||||| ||||||||||| || || || |||| |||| |||||| Sbjct 2710 AGAATAAATGCATCGGCCAAACCTTGAACACCTATTCCGATGGGTCGATGACGTTTATTC 2769 Query 47751 GA 47752 || Sbjct 2770 GA 2771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| |||||||| ||| || | |||||| | || || | | || |||| Sbjct 1916 TCCAGCCATAAAAATGCATCGAAGTCAAAGTCGAATAATTGGGCTCGGCGACATAGATAT 1975 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| ||||| ||||| ||||| | ||||||||||||||| | |||| Sbjct 1976 TCAACGATTGAGATTGATCTATAAAAGCACCCCGATCAGCTGCCATATCGATTATAATTT 2035 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATA 47197 ||||| || ||||| || |||||||| Sbjct 2036 TTTGTTTGATTTCCCAGACGGTTTTATA 2063 >seq6174 Length=13620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| |||||||| ||| || | |||||| | || || | | ||| |||| Sbjct 12625 TCCAGCCATAAAAATGCATCGAAGTCAAAGTCGAATAATTGGGCTCAGCGACATGGATAT 12566 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| ||||| ||||| || || | ||||||||||||||| | |||| Sbjct 12565 TCAACGATTGAGATTGATCTATAAAAGCGCCCCGATCAGCTGCCATATCGATTATAATTT 12506 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATA 47197 ||||| || ||||| || |||||||| Sbjct 12505 TTTGTTTGATTTCCCAGACGGTTTTATA 12478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561669392524680