Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7320 141 7e-28 seq7576 123 2e-22 seq2525 89.7 4e-12 >seq7320 Length=11514 Score = 141 bits (156), Expect = 7e-28 Identities = 301/446 (67%), Gaps = 5/446 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || ||||| ||||| || || || || ||||| ||||| || | ||||| || Sbjct 464 AGCCATCGGTATCGATTTGGGGACGACTTACAGTTGCGTTGGAGTCTTTTTGAATGGCAA 523 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 |||||||||||| ||||| || || || |||| ||| || || ||||| |||||| Sbjct 524 AGTTGAAATTATCGCCAACGACCAGGGCAACAAAACGACGCCCAGCTATGTGGGTTTCAC 583 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || |||| ||| | || |||| || ||| |||||| | | ||||| || Sbjct 584 AGACGTCGAACGTTTGATCGGCGATGGGGCCAAAGATCAAGTGGCCCGCAATCCCGAAAA 643 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 |||||||||||||| |||||||| || || | | || | ||| | | || || Sbjct 644 CACTATTTTTGATGCCAAACGTTTGATCGGTCGGAAGTTCGACGATCCATCAGTGCAAAA 703 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAAT---GTTTCTGGAAAACCTTATATTGA 550287 || |||| || ||||| ||| || |||| ||| | | ||||||||| | | || Sbjct 704 CGACGTGAAACACTGGCCGTTCAAAGTTGTCAATGGCGGTGGTGGAAAACCGAAATTAGA 763 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 || | |||| |||||||| | || ||| |||| | |||||||| Sbjct 764 AGTAGAATTTAAAGGCGAAAGGAAACAATTCGCTCCTGAAGAAATCAGTGCCATGGTTTT 823 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGCAGTAA 550406 || ||||||||| |||| || || ||| |||| |||| ||| |||||||||| Sbjct 824 GATCAAAATGAAAGAAACTGCTGAAGCGTTT-TTGGGCAAGTCAGTCCGTGATGCAGTAA 882 Query 550407 TAACTGTACCAGCATATTTTAATGAC 550432 | ||||| || || || || |||||| Sbjct 883 TCACTGTTCCGGCCTACTTCAATGAC 908 Score = 134 bits (148), Expect = 1e-25 Identities = 397/605 (66%), Gaps = 24/605 (4%) Strand=Plus/Plus Query 552009 ATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCA 552068 ||| |||| || | |||||| || |||||| ||| || || | || || | || ||| Sbjct 1368 ATTACGAGAGCTAGATTTGACGAAATTTGTGGTGAACTTTTCCGCAAGACTTTGGAGCCA 1427 Query 552069 GTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTT 552128 || |||| | | || ||||| ||| | || || || ||| | || |||||||| || Sbjct 1428 GTGGAACGTGCACTGAGGGATTCCAAGTTGGACAAGTCGAAAATCCACGAAATTGTACTG 1487 Query 552129 GTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATG 552186 ||||| || || || |||||||| | | | ||| | || | ||||||||||| Sbjct 1488 GTTGGAGGTTCAACCAGAATTCC--ACGTGTCCAAAAGCTATTGAAGGATTATTTCAATG 1545 Query 552187 GTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTC 552246 | ||| || | ||| | || || ||||| |||||||||||||| || ||| | | Sbjct 1546 GCAAAGAACTCAATTGCTCCATCAACCCGGATGAAGCTGTTGCCTATGGAGCAGCAGTGC 1605 Query 552247 AAGCAGCTATTCTTTCTGGA---CAA---ACTGATGAAAAACTACAAAATATTGTACTTG 552300 |||| || | || |||| ||| | || || ||| | ||||| |||| Sbjct 1606 AAGCTGCAGTACTCAGTGGAGTTCAAGACAATGCTGTTAAAGATC----TATTG--CTTG 1659 Query 552301 TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTA 552360 | ||||| || ||||| || | || | ||||| | |||||| | ||||| || || Sbjct 1660 TGGATGTGACACCTCTTTCCTTGGGCATCGAAACTGCTGGAGGAGTGATGACCAAGCTGG 1719 Query 552361 TCGATAGAAATACTACTATTCCTTGTAAAAAAT-CTCGTGTATTTTCTACG---TATTCA 552416 | | | || || || || ||| || | || | || ||| | ||| Sbjct 1720 TTGTACGCAACTCTCGCATACC----AAACCATGCAAGTCAAACTTTCACGACCTTCTCA 1775 Query 552417 GATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGAT 552476 || || ||| ||||||| || | || | | |||||| ||| | | | |||||||| Sbjct 1776 GACAACCAACCTGCTGTCACTGTCAAAGTGTATGAAGGCGAACGTGCAATGACTAAAGAC 1835 Query 552477 AATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCG 552536 || || | | || |||||| | | |||||||| || ||||||||||| || || Sbjct 1836 AACAACTTATTGGGCACTTTTGAACTGACGGGTATTCCACCAGCTCCTCGTGGTGTGCCT 1895 Query 552537 CAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGAT 552596 ||||| || ||| ||| || || |||||| |||||| | | || || || |||||| Sbjct 1896 CAAATCGAGGTTGGTTTTGACATTGATGCCTGTGGAATCCTACACGTCACAGCATGTGAT 1955 Query 552597 AAATC 552601 || || Sbjct 1956 AAGTC 1960 >seq7576 Length=11147 Score = 123 bits (136), Expect = 2e-22 Identities = 249/368 (68%), Gaps = 1/368 (0%) Strand=Plus/Minus Query 550171 TACTATTTTT-GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 ||| |||| | ||||||||||| ||||| || | |||| | || | || || || Sbjct 4120 TACCATTTGTAGATGCTAAACGGTTAATCGGTCGCCGTTTCGAAGACGCCACGGTCCAAT 4061 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 | || ||||| |||||||| || | || | | | || ||||| | || |||| Sbjct 4060 CCGACATGAAACATTGGCCGTTTAAGGTTATCAGCGACGGCGGCAAACCCAAAATCGAAG 4001 Query 550290 CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 || | || | ||| |||||| || || ||||| | ||||||||| Sbjct 4000 TCGAGCACAAGGGCGAAGCCAAAAAATTTTTCCCCGAGGAAATTAGCGCCATGGTTTTAG 3941 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 |||||||| |||| ||| ||||| | ||| | |||| | || || || | | Sbjct 3940 TGAAAATGCGCGAAACTGCCGAGGCTTTCCTCGGTAAGCAAGTGAAAGACGCCGTCGTCA 3881 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | ||||| || ||||| || || || |||||||| || || |||||||| || |||| Sbjct 3880 CAGTACCGGCTTATTTCAACGATTCGCAACGTCAGGCCACCAAAGATGCCGGTACCATTG 3821 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || | |||||||| ||||||||||| ||||| || || || || |||| || || | Sbjct 3820 CCGGCTTGAATGTTCTACGTATTATCAACGAACCGACAGCAGCGGCTATTGCGTACGGTC 3761 Query 550530 TTGATAAA 550537 |||||||| Sbjct 3760 TTGATAAA 3753 Score = 105 bits (116), Expect = 5e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| ||||| || || || || || || || |||||||| |||| ||| | || || Sbjct 6012 GCTATCGGTATCGACTTGGGCACTACGTACAGCTGTGTTGGCGTTTTCCAACACGGCAAG 5953 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || |||||||||||||| || ||||| ||| | ||||| || || || | ||||| Sbjct 5952 GTCGAAATTATTGCCAACGACCAAGGCAACCGCACTACGCCTAGCTACGTCGCCTTCACC 5893 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||||| |||| | || ||||| || ||| | |||| | || || || |||| Sbjct 5892 GACACTGAACGTTTAATCGGAGATGCCGCCAAAAACCAAGTCGCTTTAAACCCGCACAAT 5833 Query 550172 ACTATTTT 550179 || |||| Sbjct 5832 ACAGTTTT 5825 >seq2525 Length=27391 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||| || ||||| | ||||||||| || || || |||||||| |||||||| ||| Sbjct 5254 CCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCTTTGTC 5313 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||| |||| || | | ||| | |||| || || || || || Sbjct 5314 TTCACGTTCTCAATTGTGTCAGA-TGGTTCGACTTCCAACGTAATTGTCTTTCCCGTGAG 5372 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| |||||||||||||| Sbjct 5373 AGTTTTCACGAAAATTTGCAT 5393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025988761398130