Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3755 105 8e-18 >seq3755 Length=20876 Score = 105 bits (116), Expect = 8e-18 Identities = 219/326 (67%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || || || ||||| | || | |||||| | |||||| || | || ||| || Sbjct 10499 AACGTCAAGCCGGGCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCGAAACTACCC 10440 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 |||||||| || ||||| || || || || || || | |||| ||||| || || Sbjct 10439 GAAAAGAATATGCCTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCGAACGTCGATTGT 10380 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | ||| | ||||||||| | ||| | || || || ||| || | ||||| Sbjct 10379 TTATCGGCAATCCATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGTAAAGTTTCT 10320 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || || || ||| | |||||| | ||| || || || || || ||||| Sbjct 10319 ATAGCATTGAAAAGATGATCTTTTTCGACGGGATCGCGAATGTAGGTTTCGATGAGTAAG 10260 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 ||||||||| || || |||||||| || || || ||||| ||||||||||| | |||| Sbjct 10259 GAATACATTTCGGAATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAACAACGAGCT 10200 Query 37527 TCAGATAATTGAACATCGTTAAAAAA 37552 || | | ||| || || | | |||| Sbjct 10199 TCCGTAACTTGCACTTCTTGAGAAAA 10174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 || ||| |||||||||||| || || ||||||||||| |||||||| || ||||||| Sbjct 11525 ACGCCCGATTTTTGATATTCACCGACACGTCTTTCGAAGAAATTTGTTTTGCCTTCTAAC 11466 Query 36936 GATATATTTTCCATAAAATCAAATGGATT 36964 || || | ||||||||||| || ||||| Sbjct 11465 GAAATGTGCTCCATAAAATCGAAGGGATT 11437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591853778553480