Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2525 140 3e-28 seq391 131 1e-25 seq4826 91.5 1e-13 >seq2525 Length=27391 Score = 140 bits (154), Expect = 3e-28 Identities = 119/147 (81%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 || |||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 3613 TTACTTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAAT 3672 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 || ||||| |||| | ||||| |||| || ||||| | ||||| ||||||||| Sbjct 3673 CTTGGTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCC 3732 Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| | |||||||| || || ||||| Sbjct 3733 GGTCAGGGTTTTTACGAAAATTTGCAT 3759 Score = 118 bits (130), Expect = 8e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||| ||| || || ||||| ||||||||||| |||||||| ||||| || ||||| |||| Sbjct 2822 GCTAACCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTT 2881 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | ||| || |||| | ||||| || | ||| ||||| | ||||| ||| ||||||| Sbjct 2882 TGGTTTTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGG 2941 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||| || || || ||||| Sbjct 2942 TCAAAGTTTTCACGAAGATTTGCAT 2966 Score = 118 bits (130), Expect = 8e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| || ||||||| |||||||||||||||||| ||||||||||||||||| || || Sbjct 5543 TACCCGCGAATATCAGACGCTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGG 5602 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || || |||| | || || || | |||||| ||||| || | ||||||||||| | Sbjct 5603 TCTTGACGTTTTCGATGGTATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGA 5662 Query 101448 AAGTTTTTACAAATATCTGCATG 101470 ||||| ||||| || |||||| Sbjct 5663 GCGTTTTCACAAAAATTTGCATG 5685 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || | ||||||||||| |||||||| |||||||||||||||||||| Sbjct 4089 CTTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTT 4148 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||| |||| || ||||| | || | ||||| ||||| Sbjct 4149 CGTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGT 4208 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| || ||||| Sbjct 4209 CAGCGTTTTAACAAAAATTTGCAT 4232 Score = 98.7 bits (108), Expect = 8e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 ||||||| || |||||||| || |||||||| || || || ||||| ||||||||||| Sbjct 4428 TACCTGCGAAAATCAAACGTTGCTGATCGGGTGGGATACCCTCTTTGTCTTGAATTTTCG 4487 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| || | || | || || |||| || ||||| | || | ||||||||| || | Sbjct 4488 TTTTGACGTTCTCGATCGTATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTCA 4547 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| || ||||| Sbjct 4548 ACGTTTTGACAAAAATTTGCAT 4569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||| ||| || || || | ||| || ||||| ||||| ||||||||||| |||||||| | Sbjct 5249 GCTCACCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCT 5308 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 || || || | || | |||||||| | ||| ||||| | || | || || || | Sbjct 5309 TTGTCTTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCG 5368 Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470 | | |||||| || || || |||||| Sbjct 5369 TGAGAGTTTTCACGAAAATTTGCATG 5394 >seq391 Length=62077 Score = 131 bits (144), Expect = 1e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || |||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct 22797 CTTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAATTTT 22738 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| || |||| | |||||||||| |||||||| | |||| ||||| || || Sbjct 22737 TGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGT 22678 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || ||||||||| Sbjct 22677 CAACGTTTTGACGAAAATCTGCATG 22653 Score = 122 bits (134), Expect = 7e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| || || ||||| ||||||||||||||||| || || || |||||||||||||| Sbjct 21305 CTCACCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTT 21246 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || |||| | ||| ||||||| || ||||| | |||| ||||| ||||| Sbjct 21245 GGTTTTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGT 21186 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 |||||||| || || || |||||| |||||||| Sbjct 21185 CAAAGTTTTAACGAAGATTTGCATGCCACCGCGAAGA 21149 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| || |||||||| ||||| ||||||||||||||||| || || Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| |||| | ||| || |||| || || || | |||| ||||| || || Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || |||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCATG 21711 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || ||||| | |||||||||||||| || ||||| || ||||||||||| Sbjct 17735 CTTACCGGCGAAAATCAATCTTTGTTGATCGGGCGGGATACCTTCCTTGTCTTGAATTTT 17676 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| | ||||| || | ||| ||||| | |||| |||||| || || Sbjct 17675 AGTCTTCACGTTTTCAATCGTGTCCGAAGGTTCGACTTCTAACGTGATCGTTTTTCCTGT 17616 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || |||||||| Sbjct 17615 CAACGTTTTCACGAAAATCTGCAT 17592 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || ||| || ||| || || || ||||| || ||||| || |||||||||||||| || Sbjct 23780 TCTAATGCCTCACCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCC 23721 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || |||||| || || |||| | ||||| |||| ||| ||||| || || | ||| Sbjct 23720 TGGATTTTTGTCTTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTT 23661 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| ||||| || ||||| Sbjct 23660 TTTCCCGTCAGCGTTTTGACAAAAATTTGCAT 23629 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || |||| || |||||||| || || || ||||||||||| ||||| || Sbjct 22189 TTACCAGCGAAAATCAGGCGTTGTTGATCTGGAGGGATTCCTTCTTTATCCTGAATCTTG 22130 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | || || |||| || || ||||| |||| || ||||| || Sbjct 22129 GTTTTAACATTCTCAATCGTATCCGACGGCTCAACCTCAAGGGTGATAGTCTTGCCAGTC 22070 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 ||||| || ||||| || |||||| Sbjct 22069 AAAGTCTTGACAAAAATTTGCATG 22046 >seq4826 Length=16944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 ||||||||||||||||||||| || ||| |||| | || || |||| ||| |||||| Sbjct 7234 CCTTCTTTATCTTGAATTTTTGTCTTGACATTTTCGATCGTATCTGACGGTTCGACTTCA 7293 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || | ||||| || || |||||||| || || |||||||| ||| Sbjct 7294 AGGGTAATAGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATCGTT 7341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395976368615709