Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4826 96.9 3e-15 seq391 89.7 4e-13 seq2525 87.8 1e-12 >seq4826 Length=16944 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||||||||| || || ||| |||||||| |||||||| ||||| | || || Sbjct 6834 CGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGATAGCGTACGTCCG 6893 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG 48654 || |||||||| |||||||| || || || || |||||||||| Sbjct 6894 TCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCG 6936 >seq391 Length=62077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||||||| ||||| | || |||||||||| || | |||||| ||||| |||||| Sbjct 22511 CTTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTT 22452 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 |||||| | | | || |||| ||||| |||| || ||||| || ||||| Sbjct 22451 CGTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGT 22392 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||| || ||||| ||||| Sbjct 22391 CAAAGTTTTGACGAAAATTTGCAT 22368 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 ||| |||||| || || |||| || || ||||||| |||| ||| || || || || Sbjct 22801 ACTTCTTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAA 22742 Query 48679 TCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 | ||||||||| || | | | || |||| |||||| |||| ||| || ||||| Sbjct 22741 T-TTTTGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTC 22683 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| ||||| || ||||||||||| Sbjct 22682 CCCGTCAACGTTTTGACGAAAATCTGCAT 22654 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||||||||| |||| || |||||||||| || | ||| || || || ||||| Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 |||||| | | || || |||| ||| ||||||| ||| || ||||| || ||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| ||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 >seq2525 Length=27391 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||||||||| || || ||||||||||||| |||| || || || || ||| || Sbjct 4089 CTTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAAT-TT 4147 Query 48683 TTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | || || ||| | | || || |||| ||| || |||| |||||| ||||| || | Sbjct 4148 TCGTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGG 4207 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||||| |||||||| ||||| Sbjct 4208 TCAGCGTTTTAACAAAAATTTGCAT 4232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380647260908451