Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7320 168 4e-36 seq7576 167 2e-35 seq391 95.1 8e-14 seq2525 91.5 1e-12 seq1959 87.8 1e-11 >seq7320 Length=11514 Score = 168 bits (186), Expect = 4e-36 Identities = 612/940 (65%), Gaps = 36/940 (4%) Strand=Plus/Plus Query 475347 GTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATA 475406 |||||||| || | ||| || ||||| || | ||||| |||||||||||||| || | Sbjct 1123 GTCTTTTCGAAGTGAAAGCCACTGCTGGGGACACTCATCTGGGTGGTGAAGATTTCGACA 1182 Query 475407 ATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAA---AATAAAG--TTGAT 475459 || ||||| | ||| | || | || ||||| | || || |||| |||| Sbjct 1183 ATTTGCTTGTTGACCAT--TTCGTCCAGGAGTTCAAACGCAAGCACAACAAAGACTTGAA 1240 Query 475460 CTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGA 475519 || | || || |||||| || ||||| | || || |||||| | || || | Sbjct 1241 G----AAGAA-TGTTAGAGCATTGAGGCGTCTGCGGACAGCCTGTGAAAGGGCCAAA--A 1293 Query 475520 GCTCTTTCTTCTGCTACTCAAA--CTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTG 475577 | | || | | | | | || | | | | ||||| || |||||| ||||| || | Sbjct 1294 GGACCTTGTCCAGTTCCACAGAGGCGGCCCTCGAAGTGGACAGTCTTTTCGAAGGGATCG 1353 Query 475578 ATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAA 475637 | | | | | ||||| || |||| |||||| || |||||| ||| || || | | Sbjct 1354 ACTTTCACAGCAAAATTACGAGAGCTAGATTTGACGAAATTTGTGGTGAACTTTTCCGCA 1413 Query 475638 AAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCC 475697 | || | || || || |||| | || || ||||| || | ||||| || || ||| Sbjct 1414 AGACTTTGGAGCCAGTGGAACGTGCACTGAGGGATTCCAAGTTGGACAAGTCGAAAATCC 1473 Query 475698 ATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAAT--AAGAGAAATGCTTTC 475755 | |||||||| || || ||||||||||| ||||||||| | || || || Sbjct 1474 ACGAAATTGTACTGGTTGGAGGTTCAACCAGAATTCCACGTGTCCAAAAGCTATTGAAGG 1533 Query 475756 ATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATA 475815 || ||||| ||||| ||| | | ||| | || || |||||||||||||| || Sbjct 1534 AT--TATTTCAATGGCAAAGAACTCAATTGCTCCATCAACCCGGATGAAGCTGTTGCCTA 1591 Query 475816 TGGAGCTGCTGTCCAAGCAGC--TATTTTAT-CAGGTCAATCAGACGA-GAAACTAAATA 475871 |||||| || || ||||| || || | | || ||| |||| | | |||| | Sbjct 1592 TGGAGCAGCAGTGCAAGCTGCAGTACTCAGTGGAGTTCA---AGACAATGCTGTTAAAGA 1648 Query 475872 -ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT 475930 ||||| ||||| || || || || ||||| || || | ||||| | |||||| | Sbjct 1649 TCTATTG--CTTGTGGATGTGACACCTCTTTCCTTGGGCATCGAAACTGCTGGAGGAGTG 1706 Query 475931 ATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA--AAAATCAAAAGTATTTT 475988 ||||| || || ||| | || ||| || ||| | | || ||||| || Sbjct 1707 ATGACCAAGCTGGTTGTACGCAACTCTCGCATACCAAACCATGCAAGTCAAA--CTTTCA 1764 Query 475989 CCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAAT 476048 | || | || || || ||| | |||| || || || | | |||||| ||| | | Sbjct 1765 CGACCTTCTCAGACAACCAACCTGCTGTCACTGTCAAAGTGTATGAAGGCGAACGTGCAA 1824 Query 476049 TCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCA 476108 | |||||||| || ||| | | || |||||| | || |||||||| || ||||| Sbjct 1825 TGACTAAAGACAACAACTTATTGGGCACTTTTGAACTGACGGGTATTCCACCAGCTCCTC 1884 Query 476109 GAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTA 476168 | || || |||||||| || ||| |||||| |||||||| ||| || || | || | Sbjct 1885 GTGGTGTGCCTCAAATCGAGGTTGGTTTTGACATTGATGCCTGTGGAATCCTACACGTCA 1944 Query 476169 CTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAATCGTGGTA 476228 | || |||||||| || | | || || || || || || | |||| | ||||| Sbjct 1945 CAGCATGTGATAAGTCCACTGGAAAATCCAACAAGATCACCATCAAAAACGAACGTGGAC 2004 Query 476229 GATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGC 476268 |||| | | | ||||| | || |||||| | ||||| Sbjct 2005 GATTATCCAAGGTCGAAATTGATCGCATGGTTCAAGAAGC 2044 Score = 158 bits (174), Expect = 8e-33 Identities = 306/448 (68%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAG----CTGTTTGGCAAAATGG 474384 || || ||||| ||||| || || ||||||||||| || | || |||| ||||| Sbjct 465 GCCATCGGTATCGATTTGGGGACGACTTACAGTTGCGTTGGAGTCTTTTTG----AATGG 520 Query 474385 TAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTT 474444 ||||| ||||| || ||||| ||||| || || | ||| || || ||||| ||| Sbjct 521 CAAAGTTGAAATTATCGCCAACGACCAGGGCAACAAAACGACGCCCAGCTATGTGGGTTT 580 Query 474445 TACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGT 474504 || || |||| | | || || |||| || ||| |||||| || ||||| | Sbjct 581 CACAGACGTCGAACGTTTGATCGGCGATGGGGCCAAAGATCAAGTGGCCCGCAATCCCGA 640 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || |||||||||||||| ||| | ||||| ||||| || || || ||| | | || || Sbjct 641 AAACACTATTTTTGATGCCAAACGTTTGATCGGTCGGAAGTTCGACGATCCATCAGTGCA 700 Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAAT---GTTGGTGGTAAACCATATAT 474621 | || || || ||||| || || || | ||| | |||||| ||||| | | Sbjct 701 AAACGACGTGAAACACTGGCCGTTCAAAGTTGTCAATGGCGGTGGTGGAAAACCGAAATT 760 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 ||||| | | ||| |||| |||||||| | || ||| |||| | | ||||| Sbjct 761 AGAAGTAGAATTTAAAGGCGAAAGGAAACAATTCGCTCCTGAAGAAATCAGTGCCATGGT 820 Query 474682 TTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAG-AAGTAACTGATGCAG 474740 ||| |||||||||| |||| || | | | |||| |||| ||| |||||||| Sbjct 821 TTTGATCAAAATGAAAGAAACTGCTGAAGCGT-TTTTGGGCAAGTCAGTCCGTGATGCAG 879 Query 474741 TAATTACTGTTCCAGCATATTTTAATGA 474768 |||| |||||||| || || || ||||| Sbjct 880 TAATCACTGTTCCGGCCTACTTCAATGA 907 >seq7576 Length=11147 Score = 167 bits (184), Expect = 2e-35 Identities = 262/371 (71%), Gaps = 3/371 (1%) Strand=Plus/Minus Query 474508 TACTATTTTT-GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAAT 474566 ||| |||| | ||||||||| | || || ||||| ||| || || |||| ||||||| Sbjct 4120 TACCATTTGTAGATGCTAAACGGTTAATCGGTCGCCGTTTCGAAGACGCCACGGTCCAAT 4061 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG 474626 | || ||| |||||||| |||||||| || | | || || ||||| | || |||| Sbjct 4060 CCGACATGAAACATTGGCCGTTTAAGGTTATCAGCGACGGCGGCAAACCCAAAATCGAAG 4001 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 ||| || ||| | ||| |||||| || || ||||| | |||||||||| Sbjct 4000 TCGAGCACAAGGGCGAAGCCAAAAAATTTTTCCCCGAGGAAATTAGCGCCATGGTTTTAG 3941 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 |||||| |||| || ||| | | || || | |||| | || || || | Sbjct 3940 TGAAAATGCGCGAAACTGCCGAGG-CTTTCCTCGGTAAGCAAGTGAAAGACGCCGTCGTC 3882 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || ||||| || ||||| |||||||| || || |||||||| || | ||| Sbjct 3881 ACAGTACCGGCTTATTTCAACGATTCGCAACGTCAGGCCACCAAAGATGCCGGTACCATT 3822 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || | |||||| |||||||||| || ||||| |||||||| || |||| || ||| Sbjct 3821 GCCGGCTTGAATGTTCTACGTATTATCAACGAACCGACAGCAGCGGCTATTGCGTACGGT 3762 Query 474866 CTTGATAAGAA 474876 |||||||| || Sbjct 3761 CTTGATAAAAA 3751 >seq391 Length=62077 Score = 95.1 bits (104), Expect = 8e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689 || ||||| ||||| || ||||||||||| ||||| |||||||| || || |||||||| Sbjct 22189 TTACCAGCGAAAATCAGGCGTTGTTGATCTGGAGGGATTCCTTCTTTATCCTGAATCTTG 22130 Query 480690 TGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTG 480749 ||| ||| ||||| ||||| | | | |||||||| ||||| || || || Sbjct 22129 GTTTTAACATTCTCAATCGTATCCGACGGCTCAACCTCAAGGGTGATAGTCTTGCCAGTC 22070 Query 480750 AGAGTCTTAACGAAAATTTG 480769 | |||||| || |||||||| Sbjct 22069 AAAGTCTTGACAAAAATTTG 22050 >seq2525 Length=27391 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| || ||||| || || || |||||||| || ||||||||||| || |||||||| || Sbjct 4089 CTTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAAT-TT 4147 Query 480689 TTGT-TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCG 480746 | || |||||| || ||||| || | | | | || ||| ||||| ||||||||| Sbjct 4148 TCGTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAA-CGTAATGGTTTTACCG 4206 Query 480747 GTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| |||||||| Sbjct 4207 GTCAGCGTTTTAACAAAAATTTG 4229 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || || || ||||||||||| ||||| || || || ||||| ||||||||||||||| Sbjct 5254 CCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCTTTGTC 5313 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || || ||||| || |||| || | | || ||| ||||| || || || ||||| Sbjct 5314 TTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAA-CGTAATTGTCTTTCCCGTGAG 5372 Query 480752 AGTCTTAACGAAAATTTG 480769 ||| || ||||||||||| Sbjct 5373 AGTTTTCACGAAAATTTG 5390 >seq1959 Length=31643 Score = 87.8 bits (96), Expect = 1e-11 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 299113 TGAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAA 299172 ||| || || ||||||||||| ||| ||| | ||| | ||||| ||||| |||| ||| Sbjct 30834 TGACGACGACATTAAAAAAGCCTATCGTAAAATGGCTCTAAAATACCATCCAGACAAAAA 30893 Query 299173 TAAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTC 299232 ||| |||| ||| ||||| || |||||| |||| | || || | || | Sbjct 30894 TAAGTCGCCTGGAGCCGAAGAGAAATTTAAAGAAATTGCCGAAGCGTACGATGTTTTAAG 30953 Query 299233 AGATCCAACCAA-AAAAGAAGTATATGATAAATTTGGAGAAGAAGGATTAAA 299283 ||| ||| || ||||| | ||||||||||||| || ||||||||||| || Sbjct 30954 CGATTCAAAAAAGAAAAGCA-TATATGATAAATTCGGTGAAGAAGGATTGAA 31004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265496684640476