Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2525 125 1e-23 seq391 123 4e-23 >seq2525 Length=27391 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || |||||||| |||| | ||||||||| || || ||||||||||||||||| ||||| Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTC 4149 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 || || | ||| ||||| ||||| | ||| ||||| | || || |||||||| || Sbjct 4150 GTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTC 4209 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 |||||||| ||||| ||||||||| Sbjct 4210 AGCGTTTTAACAAAAATTTGCATT 4233 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||| || || |||| |||||||||||| || |||||||| || ||||| ||||||||| Sbjct 2827 CCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTT 2886 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || || || || | |||||||||| ||| || || || || || | Sbjct 2887 TTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAA 2946 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| || || |||||||| Sbjct 2947 GTTTTCACGAAGATTTGCAT 2966 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||| || || || |||||||||||||| || ||||| || | ||| || || Sbjct 5562 CTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGGTCTTGACGTTTTCGATGGT 5621 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| || || || || || || ||||| || || |||||||| ||||| ||||| Sbjct 5622 ATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGAGCGTTTTCACAAAAATTTG 5681 Query 193358 CATTTT 193363 ||| || Sbjct 5682 CATGTT 5687 >seq391 Length=62077 Score = 123 bits (136), Expect = 4e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || ||||||||||| || | |||||||| || ||||| |||||||||||||| || ||| Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 ||||||| ||| |||||||||||| | ||| || || | || |||||||| || || Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || |||||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||| || || || | ||||||||| || || || || || |||||||| ||||||||| Sbjct 21301 CCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGTT 21242 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| |||||||| || | ||||||||||| || || |||||||| || | Sbjct 21241 TTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAAA 21182 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| || || |||||||| Sbjct 21181 GTTTTAACGAAGATTTGCAT 21162 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| | | |||||||| ||||| |||||||||||||| || || ||| Sbjct 22189 TTACCAGCGAAAATCAGGCGTTGTTGATCTGGAGGGATTCCTTCTTTATCCTGAATCTTG 22130 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 ||||| | ||| ||| ||||| || | |||||| || || || ||||| || || || Sbjct 22129 GTTTTAACATTCTCAATCGTATCCGACGGCTCAACCTCAAGGGTGATAGTCTTGCCAGTC 22070 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 | || || ||||| |||||||| Sbjct 22069 AAAGTCTTGACAAAAATTTGCAT 22047 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || || || ||||| | || ||||| || || || |||||||| || || ||||| || Sbjct 23768 CCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGTC 23709 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || || || || | || ||||| || ||||||||||| || || ||| Sbjct 23708 TTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAGC 23649 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| ||||| |||||||| Sbjct 23648 GTTTTGACAAAAATTTGCAT 23629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898951128909840