Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3755 150 3e-31 seq391 127 3e-24 seq2525 91.5 2e-13 >seq3755 Length=20876 Score = 150 bits (166), Expect = 3e-31 Identities = 224/318 (70%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 18182 TCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttttt 18241 ||||| || ||||| | |||||||| ||||| || |||||||| | || | ||||||| Sbjct 10526 TCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGGGCATGAGGCCCCGTTTTTTT 10467 Query 18242 AGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCT 18301 | |||||| ||||| |||||||||| ||||||||||| || || ||| ||||| || Sbjct 10466 AACCAAAAAATCGACGCGAAACTACCCGAAAAGAATATGCCTTCGACGGCGGCGAAAGCC 10407 Query 18302 ATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG-TATCCATTTTTGTGCCCATTCTCC 18360 | || | ||| || ||| || || || | |||||||| ||||||| | Sbjct 10406 ACCAAACGTTC-GCCGAACGTCGATTGTTTATCGGCAATCCATTTCAAAGCCCATTGAGC 10348 Query 18361 TTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGA 18420 || | || |||| | | ||||||||||| || | || ||||||||| || Sbjct 10347 TTTCTTTTGAACGCAAGGTAAAGTTTCTATAGCATTGAAAAGATGATCTTTTTCGACGGG 10288 Query 18421 ATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGC 18480 ||| || || || ||||| | || ||||||||||| ||||| || |||| || || Sbjct 10287 ATCGCGAATGTAGGTTTCGATGAGTAAGGAATACATTTCGGAATGGATATTTTCGATTGC 10228 Query 18481 TATCTGAAAACTATAAAA 18498 || ||||| | |||||| Sbjct 10227 AATTTGAAAGCCATAAAA 10210 >seq391 Length=62077 Score = 127 bits (140), Expect = 3e-24 Identities = 119/150 (79%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 155818 ATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 ||||| ||||| || || | ||||| ||||| |||||||| || || |||||||||||| Sbjct 17586 ATAAATATGCAGATTTTCGTGAAAACGTTGACAGGAAAAACGATCACGTTAGAAGTCGAA 17645 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| || | ||| ||||||||| | |||||| ||||| || ||||| || || || Sbjct 17646 CCTTCGGACACGATTGAAAACGTGAAGACTAAAATTCAAGACAAGGAAGGTATCCCGCCC 17705 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAG 155966 || |||||||||||||||| ||||||||| Sbjct 17706 GATCAACAAAGATTGATTTTCGCCGGTAAG 17735 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||| |||||||| || || || ||||| || Sbjct 21712 ATGCAAATTTTCGTCAAAACCTTGACTGGGAAAACTATCACGTTGGAGGTCGAGCCGTCC 21771 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| |||||| |||| || || |||||||||||||||||||| || || ||| Sbjct 21772 GATACTATTGAAAACGTAAAAACCAAGATCCAAGATAAAGAAGGCATACCGCCGGATCAA 21831 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| | ||||||| ||||||||| Sbjct 21832 CAACGCTTGATTTTTGCCGGTAA 21854 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| ||||| || ||||| || || |||||||| || ||| Sbjct 21162 ATGCAAATCTTCGTTAAAACTTTGACCGGTAAAACCATCACGTTAGAAGTTGAGCCGTCT 21221 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||||||||| ||||| |||||||| || || || || || || ||| Sbjct 21222 GATACTATCGAAAACGTGAAAACCAAAATTCAAGATAAGGAGGGTATCCCGCCCGATCAA 21281 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 || | ||||| | |||||| || Sbjct 21282 CAGCGCTTGATCTTCGCCGGTGAG 21305 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| || || || || || || ||||| ||| || Sbjct 22368 ATGCAAATTTTCGTCAAAACTTTGACGGGCAAGACGATCACCTTGGAAGTGGAACCGTCC 22427 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| |||| || || ||||| ||||| ||||||||||| || ||| Sbjct 22428 GATACCATCGAGAACGTAAAAACGAAGATTCAAGACAAAGAGGGCATACCTCCGGATCAA 22487 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 ||| | || || | ||||||||| Sbjct 22488 CAACGTTTAATATTCGCCGGTAAG 22511 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| || ||||| || || || ||||| || ||| Sbjct 22654 ATGCAGATTTTCGTCAAAACGTTGACGGGGAAAACCATCACGTTGGAAGTGGAGCCGTCT 22713 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| |||| ||||| || |||||||||||||| || || || || Sbjct 22714 GACACGATCGAAAACGTCAAAACAAAAATTCAGGATAAAGAAGGCATTCCGCCGGATCAG 22773 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAG 155969 ||| | ||||| | || |||||| || Sbjct 22774 CAACGTTTGATCTTCGCTGGTAAGAAG 22800 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||| ||||||||||| || | ||||||||| || Sbjct 23629 ATGCAAATTTTTGTCAAAACGCTGACGGGAAAAACTATAACGCTGGAAGTCGAACCGTCG 23688 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || | ||||| || || ||||||||||| || ||||| || Sbjct 23689 GACACGATCGAAAACGTCAAGACAAAAATCCAGGACAAAGAAGGCATTCCACCAGATCAG 23748 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 ||| | || || | || ||| || Sbjct 23749 CAACGTTTAATCTTCGCTGGTGAG 23772 >seq2525 Length=27391 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| || || || || || |||||||| ||| || Sbjct 2966 ATGCAAATCTTCGTGAAAACTTTGACCGGCAAGACGATCACTTTAGAAGTTGAACCCTCG 2907 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||||| ||||| ||||| || ||||| || || || || ||| Sbjct 2906 GACACGATCGAAAACGTGAAAACCAAAATCCAAGACAAGGAAGGAATTCCGCCTGATCAA 2847 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || ||||||| | |||||| ||| Sbjct 2846 CAGCGATTGATCTTCGCCGGTTAGC 2822 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| |||| || ||||| || || ||||||||||| || Sbjct 3760 AATGCAAATTTTCGTAAAAACCCTGACCGGCAAAACGATCACTTTAGAAGTCGAGCCGTC 3701 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || |||||| || | || || ||||| ||||||||||| || || || || Sbjct 3700 GGACACGATCGAAAACGTAAAGACCAAGATTCAAGACAAAGAAGGCATCCCGCCCGATCA 3641 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| | ||||||| ||| |||||| Sbjct 3640 ACAGCGTTTGATTTTTGCTGGTAAG 3616 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| |||| || ||||| ||||| || |||||||| || Sbjct 4233 AATGCAAATTTTTGTTAAAACGCTGACCGGTAAAACCATTACGTTGGAAGTCGAGCCGTC 4174 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || | ||||| |||||||||||||| || || || || || Sbjct 4173 CGACACTATCGACAATGTCAAGACGAAAATTCAAGATAAAGAAGGAATTCCGCCGGATCA 4114 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| | | || | |||||||||| Sbjct 4113 ACAGCGCCTAATCTTTGCCGGTAAG 4089 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || ||||| || ||||| || ||||||||| ||| Sbjct 5393 ATGCAAATTTTCGTGAAAACTCTCACGGGAAAGACAATTACGTTGGAAGTCGAACCATCT 5334 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| | || || ||||| ||||||||||| || ||||| || Sbjct 5333 GACACAATTGAGAACGTGAAGACAAAGATTCAAGACAAAGAAGGCATCCCGCCAGATCAG 5274 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 ||| | | || | |||||| ||| Sbjct 5273 CAACGTCTTATCTTCGCCGGTGAGC 5249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731299886509200