Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2525 116 7e-21 seq3755 100 6e-16 seq391 96.9 7e-15 seq4826 84.2 4e-11 >seq2525 Length=27391 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||||| | ||||||||| || || ||||||||||||||||| ||||| Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTC 4149 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 | || ||||| |||| || |||| || ||||| | |||||||||||||| || Sbjct 4150 GTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTC 4209 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | ||||||| ||| || |||||| Sbjct 4210 AGCGTTTTAACAAAAATTTGCATT 4233 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| || ||||| |||| |||||||||||| || |||||||| || ||||| ||||| | Sbjct 2826 ACCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGT 2885 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| || || || | || || | ||| ||||||| ||| || || || || || || Sbjct 2886 TTTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAA 2945 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||||| | || || ||||| Sbjct 2946 AGTTTTCACGAAGATTTGCAT 2966 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | ||||||||| || || || |||||||| ||||| || || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 | ||||| || || | || |||| || ||||||| ||| || ||||| || || Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | ||||| | || || |||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCATT 3760 >seq3755 Length=20876 Score = 100 bits (110), Expect = 6e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| ||||| ||||||| || ||||| || || || || ||||| | || | |||| Sbjct 10528 CCTCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGGGCATGAGGCCCCGTTTTT 10469 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | | |||||| || || || ||||||| ||||||||||| || ||||| || || | Sbjct 10468 TTAACCAAAAAATCGACGCGAAACTACCCGAAAAGAATATGCCTTCGACGGCGGCGAAAG 10409 Query 49966 CTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTG 50025 | | | | | | || ||| | ||| | ||| ||||| || | |||||| | | Sbjct 10408 CCACCAAACGTTCGCCGAACGTCGATTGTTTATCGGCAATCCATTTCAAAGCCCATTGAG 10349 Query 50026 CtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTCAtttttttC 50080 |||| |||| | |||||| | |||||||||| || || | | || |||||| Sbjct 10348 CTTTCTTTTGAACGCAAGGTAAAGTTTCTATAGCATTGAAAAGATGATCTTTTTC 10294 >seq391 Length=62077 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| || ||||| || | ||||||||| || || || || || |||||||| ||||| | Sbjct 21302 ACCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGT 21243 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| || || |||| ||| |||| || ||||||| || ||||||||||| || || Sbjct 21242 TTTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAA 21183 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||||||| || || ||||| Sbjct 21182 AGTTTTAACGAAGATTTGCAT 21162 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| ||||| || || | |||||||| || ||||| |||||||||||||| || || Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||||||| || |||| ||| |||| || || || | || || ||||| ||||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 || ||||| | || || ||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 >seq4826 Length=16944 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||||||||| ||||| | || ||||| || | |||||||| ||| ||||| Sbjct 7234 CCTTCTTTATCTTGAATTTTTGTCTTGACATTTTCGATCGTATCTGACGGTTCGACTTCA 7293 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||||| || || ||||| | || |||||||| Sbjct 7294 AGGGTAATAGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 7337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983691180169950