Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2525 107 3e-18 seq391 100 5e-16 seq4826 93.3 8e-14 seq3755 87.8 3e-12 >seq2525 Length=27391 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| ||||| |||| | |||||| || || || ||||||||||||||||| ||||| Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTC 4149 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 | || ||||| ||||| || |||| || ||||| | |||||||||||||| || Sbjct 4150 GTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTC 4209 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | ||||||| || || |||||| Sbjct 4210 AGCGTTTTAACAAAAATTTGCATT 4233 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| || | |||||| || || || || |||||||| ||||| || || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 | ||||| || || || || |||| || ||||||| ||| || ||||| || || Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | ||||| | ||| || |||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCATT 3760 >seq391 Length=62077 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| |||||||| || | ||||| || || ||||| |||||||||||||| || || Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||||||| || |||||||| |||| || || || | || || ||||| ||||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 || ||||| | ||| || ||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| || || || || | |||||| || || || || || || |||||||| ||||| | Sbjct 21302 ACCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGT 21243 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| || || |||||||| |||| || ||||||| || ||||||||||| || || Sbjct 21242 TTTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAA 21183 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||||||| ||| || ||||| Sbjct 21182 AGTTTTAACGAAGATTTGCAT 21162 >seq4826 Length=16944 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||||||||| ||||| | || ||||| || |||||||||| ||| ||||| Sbjct 7234 CCTTCTTTATCTTGAATTTTTGTCTTGACATTTTCGATCGTATCTGACGGTTCGACTTCA 7293 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| |||||||| || || ||||| | ||| |||||||| Sbjct 7294 AGGGTAATAGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 7337 >seq3755 Length=20876 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209 || ||||| ||||||| || ||||| || || || || ||||| | || | ||||| Sbjct 10526 TCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGGGCATGAGGCCCCGTTTTTTT 10467 Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269 | |||||| || || || ||||||| ||||||||||| || || || || || || Sbjct 10466 AACCAAAAAATCGACGCGAAACTACCCGAAAAGAATATGCCTTCGACGGCGGCGAAAGCC 10407 Query 39270 ATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCt 39329 | | | | | || ||| | ||| | ||| |||||| || | ||||| | ||| Sbjct 10406 ACCAAACGTTCGCCGAACGTCGATTGTTTATCGGCAATCCATTTCAAAGCCCATTGAGCT 10347 Query 39330 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 || |||| | |||||| | |||||||||| || || Sbjct 10346 TTCTTTTGAACGCAAGGTAAAGTTTCTATAGCATTGAA 10309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904428443874600