Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3755 95.1 4e-14 >seq3755 Length=20876 Score = 95.1 bits (104), Expect = 4e-14 Identities = 236/351 (67%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 133291 AGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATAT 133350 |||||| ||| | | ||||| ||| |||||||| | || ||||| || |||||||| Sbjct 10182 AGAAGTGCAAGTTACGGAAGCTCGTTGTTTTTATGGCTTTCAAATTGCAATCGAAAATAT 10241 Query 133351 CCATTCTATCACATATTC--TACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 |||||| | ||||| ||||| || || || ||||| ||| ||||| | || Sbjct 10242 CCATTCCGAAATGTATTCCTTACTC--ATCGAAACCTACATTCGCGATCCCGTCGAAAAA 10299 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTT-CCTTGTATTAAAAAGAAATCTGACTGGGC 133467 | | || ||||| || | ||| | ||| ||||| || |||||||| || | ||||| Sbjct 10300 GATCATCTTTTCAATGCTA-TAGAAACTTTACCTTGCGTTCAAAAGAAAGCTCAATGGGC 10358 Query 133468 TATTAAATGGATCCAGGACAAGCGTGCGA-GTTTTGCTACTCGTCTCGTTGCTTTTGCTG 133526 | | |||||||| || || | ||| ||| || | ||| | || ||||| || | Sbjct 10359 TTTGAAATGGATTGCCGATAAACAATCGACGTTCGGCGA-ACGTTTGGTGGCTTTCGCCG 10417 Query 133527 TAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTG 133586 || || ||||| || || ||| ||| || ||||||||| | ||||| || | Sbjct 10418 CCGTCGAAGGCATATTCTTTTCGGGTAGTTTCGCGTCGATTTTTTGGTTAAAAAAACGGG 10477 Query 133587 GTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 | | | || || || || |||||| ||||| || ||||| |||| Sbjct 10478 GCCTCATGCCCGGCTTGACGTTCAGTAACGAGCTTATATCGAGGGATGAGG 10528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470638298328969