Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4826 113 4e-20 seq2525 109 5e-19 seq391 109 5e-19 seq6174 89.7 5e-13 seq4713 86.0 6e-12 >seq4826 Length=16944 Score = 113 bits (124), Expect = 4e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24804 AAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGA 24863 |||| || ||||| |||||||||||| | || || ||||| |||||| |||| || Sbjct 6948 AAGGCATCCCTCCGGATCAACAACGTCTAATTTTCGCCGGTAAACAGTTGGAAGACGGAC 6889 Query 24864 GAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGC 24923 | | | || ||||| |||||||||||||| ||||| || || |||||||||||||||| Sbjct 6888 GTACGCTATCCGATTACAACATTCAAAAGGAGTCGACTCTTCATTTGGTGTTGCGATTGC 6829 Query 24924 GCGGAGGCGG 24933 |||| ||||| Sbjct 6828 GCGGTGGCGG 6819 >seq2525 Length=27391 Score = 109 bits (120), Expect = 5e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||||||||| ||||||||||| |||||| | ||||| || | || Sbjct 4232 ATGCAAATTTTTGTTAAAACGCTGACCGGTAAAACCATTACGTTGGAAGTCGAGCCGTCC 4173 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || || ||| || ||||| ||||||||||| || || ||||| Sbjct 4172 GACACTATCGACAATGTCAAGACGAAA-ATTCAAGATAAAGAAGGAATTCCGCCGGATCA 4114 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 ||| || | ||||||||||| || Sbjct 4113 ACAGCGCCTAATCTTTGCCGGTAA 4090 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | |||||||| ||||| ||||| |||||||| || || ||| | | Sbjct 5684 ATGCAAATTTTTGTGAAAACGCTCACCGGCAAAACAATTACGCTTGAGGTGGAACCTTCG 5625 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||||||||| |||||||| || || ||||||||| Sbjct 5624 GATACCATCGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGCATCCCGCCCGATCAA 5565 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| |||| || || || Sbjct 5564 CAGCGTCTGATATTCGCGGG 5545 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| | ||||| || || || || | ||||| ||| || | Sbjct 2966 ATGCAAATCTTCGTGAAAACTTTGACCGGCAAGACGATCACTTTAGAAGTTGAACCCTCG 2907 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||||| ||| ||||||||||| |||||||| || || ||||| Sbjct 2906 GACACGATCGAAAACGTGAAAACCAAA-ATCCAAGACAAGGAAGGAATTCCGCCTGATCA 2848 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || |||||||| ||||| Sbjct 2847 ACAGCGATTGATCTTCGCCGG 2827 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || ||||| ||||| || || | ||||| || | | Sbjct 3759 ATGCAAATTTTCGTAAAAACCCTGACCGGCAAAACGATCACTTTAGAAGTCGAGCCGTCG 3700 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| ||||| |||||||||||||| || || ||||||||| Sbjct 3699 GACACGATCGAAAACGTAAAGACCAAGATTCAAGACAAAGAAGGCATCCCGCCCGATCAA 3640 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || |||||||| ||||| || || Sbjct 3639 CAGCGTTTGATTTTTGCTGGTAA 3617 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | |||||| | || || ||||| || ||| | |||||||| | || Sbjct 4569 ATGCAAATTTTTGTCAAAACGTTGACTGGCAAAACGATAACGTTGGAAGTAGAGCCGTCC 4510 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||||| ||| || ||||||||||| || || || |||||||| Sbjct 4509 GATACGATCGAGAACGTCAAAACGAAA-ATTCAAGACAAAGAGGGTATCCCACCCGATCA 4451 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||||||||| || || || Sbjct 4450 GCAACGTTTGATTTTCGCAGG 4430 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || || || || |||||| | ||||| ||| | | Sbjct 5393 ATGCAAATTTTCGTGAAAACTCTCACGGGAAAGACAATTACGTTGGAAGTCGAACCATCT 5334 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| || ||||| ||| |||||||||||||| || || || ||||| Sbjct 5333 GACACAATTGAGAACGTGAAGACAAA-GATTCAAGACAAAGAAGGCATCCCGCCAGATCA 5275 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 |||||| | ||||| ||||| Sbjct 5274 GCAACGTCTTATCTTCGCCGG 5254 >seq391 Length=62077 Score = 109 bits (120), Expect = 5e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | |||||| |||| || || || || ||| | ||||||||| | || Sbjct 24271 ATGCAAATTTTCGTCAAAACGTTAACGGGCAAGACGATCACGTTGGAAGTAGAACCGTCC 24330 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || ||||| ||| ||||||||||||||||| || || || ||||| Sbjct 24331 GACACAATTGAAAATGTTAAAACGAAA-ATCCAAGACAAAGAAGGTATTCCACCAGATCA 24389 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 |||||| ||||||| || || || Sbjct 24390 ACAACGGCTGATCTTCGCTGGTAA 24413 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | |||||||| || || |||||||| ||||| ||||| ||| | | Sbjct 23629 ATGCAAATTTTTGTCAAAACGCTGACGGGAAAAACTATAACGCTGGAAGTCGAACCGTCG 23688 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||| ||||| ||||||||||| || || || ||||| Sbjct 23689 GACACGATCGAAAACGTCAAGACAAAA-ATCCAGGACAAAGAAGGCATTCCACCAGATCA 23747 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 |||||||| ||||| || || Sbjct 23748 GCAACGTTTAATCTTCGCTGG 23768 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || || |||||||| ||| | || || || | || Sbjct 21712 ATGCAAATTTTCGTCAAAACCTTGACTGGGAAAACTATCACGTTGGAGGTCGAGCCGTCC 21771 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| |||||| ||||||||||| |||||||| ||||| || |||||| Sbjct 21772 GATACTATTGAAAACGTAAAAACCAAGATCCAAGATAAAGAAGGCATACCGCCGGATCAA 21831 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| ||||| |||||||| || Sbjct 21832 CAACGCTTGATTTTTGCCGGTAA 21854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | |||||| | || || ||||| || ||| | ||||| ||| | | Sbjct 17592 ATGCAGATTTTCGTGAAAACGTTGACAGGAAAAACGATCACGTTAGAAGTCGAACCTTCG 17651 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || || ||| || |||||||| ||||| || || |||||||| Sbjct 17652 GACACGATTGAAAACGTGAAGACTAAA-ATTCAAGACAAGGAAGGTATCCCGCCCGATCA 17710 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 |||| | ||||| || ||||| || Sbjct 17711 ACAAAGATTGATTTTCGCCGGTAA 17734 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | |||||| | || || ||||| || ||| | ||||| || | | Sbjct 22654 ATGCAGATTTTCGTCAAAACGTTGACGGGGAAAACCATCACGTTGGAAGTGGAGCCGTCT 22713 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||||||||| || || || |||||||| || || || ||||| Sbjct 22714 GACACGATCGAAAACGTCAAAACAAAA-ATTCAGGATAAAGAAGGCATTCCGCCGGATCA 22772 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 |||||||||||||| || || || Sbjct 22773 GCAACGTTTGATCTTCGCTGGTAA 22796 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||| | ||||||||||| || ||| | ||||| || | | Sbjct 21162 ATGCAAATCTTCGTTAAAACTTTGACCGGTAAAACCATCACGTTAGAAGTTGAGCCGTCT 21221 Query 24764 GACACAGTAG-AAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | | ||||| ||||| ||| || ||||| || || || || || |||||||| Sbjct 21222 GATACTATCGAAAACGTGAAAACCAAA-ATTCAAGATAAGGAGGGTATCCCGCCCGATCA 21280 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || |||||||| ||||| Sbjct 21281 ACAGCGCTTGATCTTCGCCGG 21301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || || || || || || | ||||| ||| | || Sbjct 22368 ATGCAAATTTTCGTCAAAACTTTGACGGGCAAGACGATCACCTTGGAAGTGGAACCGTCC 22427 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | |||||| ||||| ||||||||||| || |||||||| |||||| Sbjct 22428 GATACCATCGAGAACGTAAAAACGAAGATTCAAGACAAAGAGGGCATACCTCCGGATCAA 22487 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||||| || || ||||| || Sbjct 22488 CAACGTTTAATATTCGCCGGTAA 22510 >seq6174 Length=13620 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 139124 ATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGC 139183 ||||||||||||| | ||| ||||| ||| || || || |||| ||||| ||| || Sbjct 10557 ATTCGACAATTTCCGTACATAAATTGGAACATTTTATGGTTCCTAGATTTTTTTGGTTAG 10498 Query 139184 TTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCT 139243 ||| || || ||||||||||||||||||||||| ||||| ||||| ||| | | Sbjct 10497 ATTTCGAATTGCAGGCATCTTTGTAAAGCATATACGGAGTGCCTGTTTCGGTTTGAGCTT 10438 Query 139244 CTATAAT 139250 ||| ||| Sbjct 10437 CTAAAAT 10431 >seq4713 Length=17327 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 139126 TCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTT 139185 ||||||||||| | ||| |||| ||| || || || |||||||||| |||||| | Sbjct 3119 TCGACAATTTCCGTACAAGAATTGGAACATTTTATGGTTCCTAAATTTTTCTGATTGGAT 3178 Query 139186 TTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCT 139245 || || || ||||||||||||||||| ||||| ||||| ||||| ||| | ||| Sbjct 3179 TTCGAATTGCAGGCATCTTTGTAAAGCATGTACGGAGTGCCTGTTTCGGTTTGAGCTTCT 3238 Query 139246 ATAAT 139250 | ||| Sbjct 3239 AAAAT 3243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449545909422360