Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq391 98.7 2e-15 seq2525 84.2 3e-11 >seq391 Length=62077 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| || || || ||||| || || | || || || | || Sbjct 21713 TGCAAATTTTCGTCAAAACCTTGACTGGGAAAACTATCACGTTGGAGGTCGAGCCGTCCG 21772 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| ||||||| || || ||| |||||||||||| || || ||||||| Sbjct 21773 ATACTATTGAAAACGTAAAAACCAAGATCCAAGATAAAGAAGGCATACCGCCGGATCAAC 21832 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || | | |||||||| ||||| Sbjct 21833 AACGCTTGATTTTTGCCGGTAA 21854 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || ||||||||||| || || | || || |||| | | Sbjct 17593 TGCAGATTTTCGTGAAAACGTTGACAGGAAAAACGATCACGTTAGAAGTCGAACCTTCGG 17652 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || | |||||| ||| || ||||| || || |||||||||| Sbjct 17653 ACACGATTGAAAACGTGAAGACTAAAATTCAAGACAAGGAAGGTATCCCGCCCGATCAAC 17712 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 ||||| | ||||| || ||||| Sbjct 17713 AAAGATTGATTTTCGCCGGTAA 17734 >seq2525 Length=27391 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||||||||| |||| || |||| | | Sbjct 5683 TGCAAATTTTTGTGAAAACGCTCACCGGCAAAACAATTACGCTTGAGGTGGAACCTTCGG 5624 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || || | || || ||| |||||||||||| || |||||||||| Sbjct 5623 ATACCATCGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGCATCCCGCCCGATCAAC 5564 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || || || || |||| Sbjct 5563 AGCGTCTGATATTCGCGGGTA 5543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785551843898040