Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2525 105 5e-18 seq391 104 2e-17 >seq2525 Length=27391 Score = 105 bits (116), Expect = 5e-18 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGT 29714 ||||| | ||||||||| || || ||||||||||||||||| |||||| | |||||| | Sbjct 4439 ATCAAACGTTGCTGATCGGGTGGGATACCCTCTTTGTCTTG-AATTTTCGTTTTGACGTT 4497 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | || || || | |||||||| | ||||| ||||||||||| || ||||| || Sbjct 4498 CTCGATCGTATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTCAACGTTTTGAC 4557 Query 29775 AAATATCTGCAT 29786 ||| || ||||| Sbjct 4558 AAAAATTTGCAT 4569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 || |||||||||||||| || ||||| ||||| |||||| || |||||| | || | ||| Sbjct 4111 TGTTGATCCGGCGGAATTCCTTCTTTATCTTG-AATTTTCGTCTTGACATTGTCGATAGT 4169 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| || | || ||||| | || || ||||| || || | ||||||||||| || || Sbjct 4170 GTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTCAGCGTTTTAACAAAAATTTG 4229 Query 29784 CATT 29787 |||| Sbjct 4230 CATT 4233 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||| | || ||||| ||||| || || ||||||||||| ||| || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTG-AATCTT 3675 Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || || || |||| | ||||| || | || ||||| | ||| || |||||||| || Sbjct 3676 GGTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGT 3735 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 | |||||| || || || |||||| Sbjct 3736 CAGGGTTTTTACGAAAATTTGCATT 3760 >seq391 Length=62077 Score = 104 bits (114), Expect = 2e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | ||||| | |||||||||||||||||| || ||||| || || |||||| Sbjct 22796 TTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTG-AATTTT 22738 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || |||||| |||| | |||||||| | || ||||| | || || ||||| || || Sbjct 22737 TGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGT 22678 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| Sbjct 22677 CAACGTTTTGACGAAAATCTGCAT 22654 Score = 102 bits (112), Expect = 6e-17 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGT 29714 ||||||||||| ||||| ||||| ||||| || |||||||| |||||| || || || | Sbjct 17722 ATCAATCTTTGTTGATCGGGCGGGATACCTTCCTTGTCTTG-AATTTTAGTCTTCACGTT 17664 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 ||| | ||||| ||| |||| ||||| | || || ||||| || || || ||||| || Sbjct 17663 TTCAATCGTGTCCGAAGGTTCGACTTCTAACGTGATCGTTTTTCCTGTCAACGTTTTCAC 17604 Query 29775 AAATATCTGCATTTT 29789 || |||||||| || Sbjct 17603 GAAAATCTGCATATT 17589 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 ||||| | || || | ||||||||| || ||||| || |||||||| || | ||||||| Sbjct 23768 CCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGA-TTTTTGT 23710 Query 29707 -TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||||| |||| | ||||| || |||| ||||| || ||||||||||| || || | Sbjct 23709 CTTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAG 23650 Query 29766 GGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| Sbjct 23649 CGTTTTGACAAAAATTTGCAT 23629 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | |||| | ||| ||||| || |||||||| ||||||||||| | ||| Sbjct 24413 TTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTC 24354 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| ||| |||| | ||||| || |||||||||| | || || || ||||| ||| Sbjct 24353 GTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGTT 24294 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 || ||||| || || || |||||| Sbjct 24293 AACGTTTTGACGAAAATTTGCATT 24270 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | ||||| | ||| ||||||||||| || || ||||| ||||| | || Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| || |||| | ||| || || | || || || | || |||||||| ||||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384925597602717