Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4816 140 2e-27 seq7576 131 1e-24 seq7320 118 8e-21 seq2901 100 2e-15 >seq4816 Length=16977 Score = 140 bits (154), Expect = 2e-27 Identities = 256/370 (69%), Gaps = 5/370 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| |||||||| |||| ||| || || || |||||||| || || | || |||| Sbjct 10414 TTTTTATCCAGACCATAGGCAATAGCGGCCGCCGTCGGTTCATTTATGATACGCAGAACA 10473 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | || || || | || || ||||| |||||||||| ||| |||||||||||||| Sbjct 10474 TTCAAGCCTGCGATCGTACCAGCGTCTTTGGTGGCTTGTCGTTGCGAATCGTTAAAATAA 10533 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509 || || ||||| | || |||||| | || ||| || | | || ||| | ||||||| Sbjct 10534 GCCGGTACAGTGACGACAGCATCTTTGACGGATTTGCCCA-AGAA-CGCCTCGGCTGTTT 10591 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCAT 282569 |||||| ||||| ||| | ||||||| ||| ||| || || | ||| ||| Sbjct 10592 CCCGCATTTTCACTAAAACCATGGCGGAAATTTCTTCGGGAAAAAATCGTTTGACTTCGC 10651 Query 282570 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAAT 282629 || | | || || | | |||||| || | || || || || ||||||| Sbjct 10652 CTTTGTGTTCGACCTCGATTTTCGGTTTACCGCCTTCCGATATCACCTTGAACGGCCAAT 10711 Query 282630 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 282689 |||||| || | || |||| | | |||| ||| | ||||| | ||||| |||| Sbjct 10712 GTTTCATGTCAGCTTCAACAGTAGGATCATCGAAACGACGGCCAATCAGACGTTTCGCAT 10771 Query 282690 C-AAAAATAG 282698 | ||||||| Sbjct 10772 CTGAAAATAG 10781 >seq7576 Length=11147 Score = 131 bits (144), Expect = 1e-24 Identities = 254/372 (68%), Gaps = 5/372 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||||||||| ||||||| ||| || || || ||||| || ||||| | | |||| Sbjct 3751 TTTTTATCAAGACCGTACGCAATAGCCGCTGCTGTCGGTTCGTTGATAATACGTAGAACA 3810 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | || ||||| | || |||||||| ||||| || | ||| |||||||| ||||| Sbjct 3811 TTCAAGCCGGCAATGGTACCGGCATCTTTGGTGGCCTGACGTTGCGAATCGTTGAAATAA 3870 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || | ||||| ||| | |||| || || | |||| || |||| Sbjct 3871 GCCGGTACTGTGACGACGGCGTCTTTCACTTGCTTACCGAGGAAAGCCTCGGCAGTTTCG 3930 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 |||||| ||||| ||| | ||||| || || || ||| |||| ||| Sbjct 3931 CGCATTTTCACTAAAACCATGGCGCTAATTTCCTCGGGGAAAAATTTTTTGGCTTCGCCC 3990 Query 282572 TGATATGAT--ACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAAT 282629 | | || | ||||| | | ||||| || | | ||||| ||||| ||||||| Sbjct 3991 T--TGTGCTCGACTTCGATTTTGGGTTTGCCGCCGTCGCTGATAACCTTAAACGGCCAAT 4048 Query 282630 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 282689 |||||| || ||||| || | ||| | ||| | ||| ||||| ||||| |||| Sbjct 4049 GTTTCATGTCGGATTGGACCGTGGCGTCTTCGAAACGGCGACCGATTAACCGTTTAGCAT 4108 Query 282690 C-AAAAATAGTA 282700 | | |||| ||| Sbjct 4109 CTACAAATGGTA 4120 >seq7320 Length=11514 Score = 118 bits (130), Expect = 8e-21 Identities = 296/446 (66%), Gaps = 9/446 (2%) Strand=Plus/Minus Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT-CTTTTCCAATATAAGC 282498 || || || || || |||||||| || || ||||| ||| ||| |||| || | Sbjct 907 TCATTGAAGTAGGCCGGAACAGTGATTACTGCATCACGGACTGACTTGCCCAA---AAAC 851 Query 282499 GCTT--GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATAT 282556 |||| || |||| ||||||||| | |||| ||| | |||| ||| |||| || Sbjct 850 GCTTCAGCAGTTTCTTTCATTTTGATCAAAACCATGGCACTGATTTCTTCAGGAGCGAAT 791 Query 282557 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC---ATTAATA 282613 || || ||| || | || |||||| || | ||||| |||| | ||| | | Sbjct 790 TGTTTCCTTTCGCCTTTAAATTCTACTTCTAATTTCGGTTTTCCACCACCGCCATTGACA 731 Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 ||||| || ||||| | ||||| || ||| || | | || | || | | ||| Sbjct 730 ACTTTGAACGGCCAGTGTTTCACGTCGTTTTGCACTGATGGATCGTCGAACTTCCGACCG 671 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || || ||||| |||||||||||||| || ||||| || |||||| |||||| Sbjct 670 ATCAAACGTTTGGCATCAAAAATAGTGTTTTCGGGATTGCGGGCCACTTGATCTTTGGCC 611 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 |||| || |||| | |||| ||||| || ||||| || || || || Sbjct 610 CCATCGCCGATCAAACGTTCGACGTCTGTGAAACCCACATAGCTGGGCGTCGTTTTGTTG 551 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853 || || || || || |||||||||||||| ||||| | || || || ||||| || Sbjct 550 CCCTGGTCGTTGGCGATAATTTCAACTTTGCCATTCAAAAAGACTCCAACGCAACTGTAA 491 Query 282854 GTTGTTCCTAAATCAATACCAATAGC 282879 || || || ||||| ||||| || || Sbjct 490 GTCGTCCCCAAATCGATACCGATGGC 465 >seq2901 Length=25133 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 |||| | ||||||||||||| ||| | || ||||||||||| || ||||||||| | || Sbjct 11695 TTGAAAAGTAAAGAAGGTCGAATTCGTGGCAATTTGATGGGTAAACGTGTCGATTTTTCG 11636 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCT-CTCAATGAAGTTGGTGTTCCTCT 432400 |||||||| |||||||| | ||||| ||| ||| | | || |||| |||||||| | Sbjct 11635 GCACGTACTGTTATTACGCCCGATCCGAAT-TTGATGATTGATCAAGTCGGTGTTCCACG 11577 Query 432401 CATTATTGCGAAAAATCTTACTTT 432424 ||| || ||||| | ||||| Sbjct 11576 ATCTATCGCTCAAAATTTGACTTT 11553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737560097581362