Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq391 125 1e-23 seq2525 109 1e-18 seq7715 100 6e-16 >seq391 Length=62077 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || | |||||||||||| || || ||||| || ||||| || || Sbjct 24413 TTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTC 24354 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||| ||||||||||| || || |||||||||||||| || ||||||||||| || Sbjct 24353 GTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGTT 24294 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 ||||| || || || || |||||| Sbjct 24293 AACGTTTTGACGAAAATTTGCATT 24270 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| || || || | ||||||||||||||| |||||||| ||||| |||||||| Sbjct 22189 TTACCAGCGAAAATCAGGCGTTGTTGATCTGGAGGGATTCCTTCTTTATCCTGAATCTTG 22130 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||| ||||| ||||||||||| || || || || | || || |||||||| ||| Sbjct 22129 GTTTTAACATTCTCAATCGTATCCGACGGCTCAACCTCAAGGGTGATAGTCTTGCCAGTC 22070 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| || ||||| Sbjct 22069 AAAGTCTTGACAAAAATTTGCAT 22047 Score = 120 bits (132), Expect = 6e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || | |||||||||||| || || || |||||||| |||||||| || Sbjct 17734 TTACCGGCGAAAATCAATCTTTGTTGATCGGGCGGGATACCTTCCTTGTCTTGAATTTTA 17675 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || || ||||||||||| || |||||| ||||| || || ||||| || |||||| Sbjct 17674 GTCTTCACGTTTTCAATCGTGTCCGAAGGTTCGACTTCTAACGTGATCGTTTTTCCTGTC 17615 Query 82788 AACGTCTTTACAAATATCTGCATTATTAT 82816 ||||| || || || |||||||| |||| Sbjct 17614 AACGTTTTCACGAAAATCTGCATATTTAT 17586 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || |||| | ||||||||| |||||||| || || || ||||||||||| Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTTC 22451 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | |||||| || || || ||||| ||||| |||||||| || ||||||||||| ||| Sbjct 22450 GTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGTC 22391 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || || || || || || ||||| Sbjct 22390 AAAGTTTTGACGAAAATTTGCAT 22368 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| | | |||||||| || || || || |||||||||||||| || | | Sbjct 21301 CCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGTT 21242 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || |||||| || || ||||| || || || || || || ||||| Sbjct 21241 TTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAAA 21182 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 21181 GTTTTAACGAAGATTTGCAT 21162 >seq2525 Length=27391 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| | || |||||||| || || ||||||||||| ||||| || || | | Sbjct 2827 CCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTT 2886 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 2887 TTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAA 2946 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 2947 GTTTTCACGAAGATTTGCAT 2966 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | |||||||| || || || ||||| || ||||||||||| Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||||| ||||| ||||| || || || ||||| ||||| ||||| ||||| ||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || ||||| || || |||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCATT 3760 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||||||||| | |||||||| || || |||||||| ||||||||||| || Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTC 4149 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || ||||| || || || || || || |||||||| || || || || || ||| Sbjct 4150 GTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTC 4209 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||| || ||||| || |||||| Sbjct 4210 AGCGTTTTAACAAAAATTTGCATT 4233 Score = 100 bits (110), Expect = 6e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 ||| ||||| || || || || || || |||||||| || | ||| || || || ||||| Sbjct 4447 TTGCTGATCGGGTGGGATACCCTCTTTGTCTTGAATTTTCGTTTTGACGTTCTCGATCGT 4506 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 ||| || ||||||||||| |||||||| ||||| |||||||| || ||||| || || Sbjct 4507 ATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTCAACGTTTTGACAAAAATTTG 4566 Query 82808 CAT 82810 ||| Sbjct 4567 CAT 4569 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| || | ||| |||||||| || || ||||| || ||||||||||||| Sbjct 5254 CCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCTTTGTC 5313 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| || ||| ||||| |||||||| || || ||||| || || | Sbjct 5314 TTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCGTGAGA 5373 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 5374 GTTTTCACGAAAATTTGCAT 5393 >seq7715 Length=10911 Score = 100 bits (110), Expect = 6e-16 Identities = 150/206 (73%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 144008 TAGGAGATGGGCTGA--TGTTTTTATTATAGCGCC-CTTAACAGCAAATACGTTAGCAAA 144064 |||| ||||||| | || ||||| ||||| || ||| || |||||||| || || || Sbjct 6957 TAGGCGATGGGCGCACATGCTTTTA--ATAGCTCCGCTTGAC-GCAAATACTTTGGCCAA 6901 Query 144065 AATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAA 144124 ||||||||| ||| | |||||||||||| | ||| | || ||||| |||||| | || Sbjct 6900 AATAGCCAACGGTTTGTGCGATAATTTAGTGACAAGCGTCGTCAGAGCTTGGGATTTCAA 6841 Query 144125 TAAACCTCTTATTTTTTGCCCCGCTATGAATACCCTTATGTGGGAACATCCTATT-ACAG 144183 | || | |||||||||||| ||||| || |||||||| ||| || ||| || | Sbjct 6840 TCGGCCAGTCTATTTTTGCCCCGCAATGAACACTTATATGTGGG-ACAACCCATTGACCG 6782 Query 144184 AAAAACATATAGATACTTTAAAACAT 144209 |||| || |||| || ||| || Sbjct 6781 TTCAACACTTAAATACGTTGAAAAAT 6756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981040505740043