Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2525 100 3e-16 seq4826 96.9 3e-15 seq391 93.3 4e-14 seq3755 89.7 5e-13 >seq2525 Length=27391 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 ||||||| | ||||||| ||||||||||| || || || ||||||||||| |||||| Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTC 4149 Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 || | | || | ||| |||| |||||| ||||| | ||| | |||||||| ||| Sbjct 4150 GTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTC 4209 Query 132101 AGAGTTTTTATGAAAATCTGCAT 132123 || ||||| | ||||| ||||| Sbjct 4210 AGCGTTTTAACAAAAATTTGCAT 4232 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 ||||| | | | || | |||||||||||| || || ||||||||||| || ||| || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 || | | ||| | || || | |||||| ||||| | || | |||||| || ||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 132101 AGAGTTTTTATGAAAATCTGCAT 132123 || ||||||| |||||| ||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCAT 3759 >seq4826 Length=16944 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| ||||| |||||||| | | ||||| |||||||||||||| ||| | ||| Sbjct 6828 CGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGATAGCGTA 6887 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||| | ||||||||||| | |||||||| |||||||| ||||| |||||| Sbjct 6888 CGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGGGATGCCT 6947 Query 132023 T 132023 | Sbjct 6948 T 6948 >seq391 Length=62077 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 ||||||| | | || | || |||||||| || ||||||||||||||||| || || Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 ||| | | ||| | |||||||| |||||| || || | ||| | ||||| |||||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 132101 AGAGTTTTTATGAAAATCTGCATG 132124 | ||||| | |||||| |||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCATG 21711 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131991 AGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACT 132050 |||| | ||| || ||||| || || |||||||||||||| ||||||| ||| | | Sbjct 22786 AGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAATTTTTGTTTTGACGT 22727 Query 132051 GTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110 ||| | || || | |||||||||||| | ||| | ||||| || |||| ||||| | Sbjct 22726 TTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGTCAACGTTTTGA 22667 Query 132111 TGAAAATCTGCATG 132124 ||||||||||||| Sbjct 22666 CGAAAATCTGCATG 22653 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 131983 ACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTG 132042 ||||| |||| | ||||||||||| || || || || || ||||| |||||| Sbjct 21302 ACCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGT 21243 Query 132043 TTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAG 132102 ||||| | ||| | |||||| | |||||| ||||| | ||| | |||||||| |||| Sbjct 21242 TTTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAA 21183 Query 132103 AGTTTTTATGAAAATCTGCATG 132124 |||||| | ||| || |||||| Sbjct 21182 AGTTTTAACGAAGATTTGCATG 21161 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 ||||||| | |||| ||| |||||||| ||||||||||| ||||| || ||| || Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTTC 22451 Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 ||| | | || | ||||||| ||| |||||||| | || | ||| || || ||| Sbjct 22450 GTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGTC 22391 Query 132101 AGAGTTTTTATGAAAATCTGCATG 132124 | |||||| | |||||| |||||| Sbjct 22390 AAAGTTTTGACGAAAATTTGCATG 22367 >seq3755 Length=20876 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/203 (71%), Gaps = 12/203 (6%) Strand=Plus/Plus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGAT---CGAGAGCGAGACCGCC 46817 || ||||||| || || || || ||||| |||| ||||| ||| | | | || Sbjct 10330 CCTTGCGTTCAAAAGAAAGCTCAATGGGCTTTGAAATGGATTGCCGATAAACA-ATCG-- 10386 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 ||| | | ||| || ||||||| ||||| ||||||||| | || |||||||| ||| Sbjct 10387 ACGTTCGGCGAACGTTTGGTGGCTTTCGCCGCCGTCGAAGGCATATTCTTTTCGGGTAGT 10446 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAA---GGCATAATGCCGGGCCTGACGTTCAGT 46934 || || | ||||||| |||||| ||| ||| | ||||| ||| ||||||||||| Sbjct 10447 TTCGCGTCGATTTTTTGG-TTAAAA--AAACGGGGCCTCATGCCCGGCTTGACGTTCAGT 10503 Query 46935 AACGAGTTGATCTCGCGCGACGA 46957 |||||| | || ||| | || || Sbjct 10504 AACGAGCTTATATCGAGGGATGA 10526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476238627067320