Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2525 116 4e-21 seq391 114 1e-20 seq4826 84.2 2e-11 >seq2525 Length=27391 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||||||||||||||| ||||||||||| ||||||||||| |||||||| || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||||| |||| || || || | ||| || ||||| ||||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||||| ||||||||||||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCATT 3760 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | ||||| ||||| ||||| || |||||||| ||||||||||| Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTC 4149 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| ||| | |||||||||| || || || | ||||||||||||||||| Sbjct 4150 GTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTC 4209 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | |||||||| |||||||||||| Sbjct 4210 AGCGTTTTAACAAAAATTTGCATT 4233 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| ||||||||||| ||||||||||| || || || ||||| ||||||||||| | Sbjct 4430 CCTGCGAAAATCAAACGTTGCTGATCGGGTGGGATACCCTCTTTGTCTTGAATTTTCGTT 4489 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | || ||||||| || || || | || || ||||| || || || Sbjct 4490 TTGACGTTCTCGATCGTATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTCAAC 4549 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||||||||| Sbjct 4550 GTTTTGACAAAAATTTGCAT 4569 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || |||| |||||| ||||||||||| ||||||||||| ||||| || || Sbjct 5545 CCCGCGAATATCAGACGCTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGGTC 5604 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | || || || | |||||| || || ||||| ||||| ||||| | Sbjct 5605 TTGACGTTTTCGATGGTATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGAGC 5664 Query 134694 GTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||||||||| ||| Sbjct 5665 GTTTTCACAAAAATTTGCATGTTG 5688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || || | ||| |||||||| ||||| ||||||||||| |||||||| ||| Sbjct 5254 CCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCTTTGTC 5313 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||| || | ||| || || | ||||| || || || || | | Sbjct 5314 TTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCGTGAGA 5373 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| |||||||||||||| Sbjct 5374 GTTTTCACGAAAATTTGCAT 5393 >seq391 Length=62077 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || |||||||| |||||||| ||||| ||||||||||| || ||||||||| Sbjct 22796 TTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAATTTTT 22737 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | ||||| |||| ||||| || | || |||||||| || || Sbjct 22736 GTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGTC 22677 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||| ||||| Sbjct 22676 AACGTTTTGACGAAAATCTGCAT 22654 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || ||||| ||||| ||||||||||| || || || || ||||||||||| | Sbjct 21301 CCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGTT 21242 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || |||| || || || | || |||||||||||||| ||| Sbjct 21241 TTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAAA 21182 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||||||||| |||||||| Sbjct 21181 GTTTTAACGAAGATTTGCAT 21162 Score = 104 bits (114), Expect = 2e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||||||||| || || ||||| ||||||||||||||||| ||||| || || Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 134631 TGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || | | |||| || ||||||| || || || | || || ||||| || || Sbjct 21794 GTTTTTAC-GTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGT 21736 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||||||||| Sbjct 21735 CAAGGTTTTGACGAAAATTTGCAT 21712 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || || ||||| || ||||| || |||||||| ||||| |||||||| || Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTTC 22451 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || ||||||| |||||| || | || || || || || || Sbjct 22450 GTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGTC 22391 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 |||||||| |||||||||||||| Sbjct 22390 AAAGTTTTGACGAAAATTTGCAT 22368 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || |||| || || ||||| || || || |||||||| ||||| ||||| Sbjct 24413 TTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTC 24354 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||||||||||| ||| || || | || || || || || ||| Sbjct 24353 GTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGTT 24294 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 || ||||| ||||||||||||||| Sbjct 24293 AACGTTTTGACGAAAATTTGCATT 24270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || || ||||| |||||||| || || ||||||||||| || || |||||| Sbjct 23768 CCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGTC 23709 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | ||||| |||| ||| || || || || || ||||| || || | Sbjct 23708 TTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAGC 23649 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||||||||| Sbjct 23648 GTTTTGACAAAAATTTGCAT 23629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || |||||||| | || ||||||||||| || ||||| || ||||||| |||| Sbjct 17734 TTACCGGCGAAAATCAATCTTTGTTGATCGGGCGGGATACCTTCCTTGTCTTGAA-TTTT 17676 Query 134631 TGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || | || | |||| ||||| || | ||| || || | || || ||||| || || Sbjct 17675 AGTCTTCACGTTTTCAATCGTGTCCGAAGGTTCGACTTCTAACGTGATCGTTTTTCCTGT 17616 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| |||||||| ||||| || Sbjct 17615 CAACGTTTTCACGAAAATCTGCATATT 17589 >seq4826 Length=16944 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 134610 CCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCG 134669 |||||||| |||||||||||| ||||| || | || || |||| ||| || || Sbjct 7234 CCTTCTTTATCTTGAATTTTTGTCTTGACATTTTCGATCGTATCTGACGGTTCGACTTCA 7293 Query 134670 AGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||| || |||||||| |||||||| ||||| Sbjct 7294 AGGGTAATAGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 7337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505003323753240