Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3755 138 2e-27 seq6174 107 3e-18 seq4713 104 3e-17 >seq3755 Length=20876 Score = 138 bits (152), Expect = 2e-27 Identities = 233/337 (69%), Gaps = 3/337 (1%) Strand=Plus/Minus Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 |||||| || || | || ||||| || || || ||||| | |||||| || | || Sbjct 10508 TCGTTACTGAACGTCAAGCCGGGCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCG 10449 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA 39778 ||| || |||||||| |||||||| || || || || || || | | || ||| | Sbjct 10448 AAACTACCCGAAAAGAATATGCCTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCGAAC 10389 Query 39779 CTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGC 39835 | | | |||| ||||| ||| ||||| | ||||||||| | || ||||| Sbjct 10388 GTCGATTGTTTATCGGCAATCCATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGT 10329 Query 39836 ATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCT 39895 | |||||||||||||| || |||| || |||||| | ||| || || || || Sbjct 10328 AAAGTTTCTATAGCATTGAAAAGATGATCTTTTTCGACGGGATCGCGAATGTAGGTTTCG 10269 Query 39896 ATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 || | | ||||||||| |||||||| ||||| || || || ||||| || |||||| Sbjct 10268 ATGAGTAAGGAATACATTTCGGAATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAA 10209 Query 39956 CATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATC 39992 || | ||||| |||| ||| || ||| | |||||| Sbjct 10208 CAACGAGCTTCCGTAACTTGCACTTCTTGAGAAAATC 10172 >seq6174 Length=13620 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || |||||||||| || || ||| | ||||| ||||| || || || || || ||| Sbjct 11957 TAAGTTTCATAAGTGCCGAACTTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTCCATAA 11898 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||||||||||||||| | ||| || | | |||||| | || || || || Sbjct 11897 TAAATTGTTTCGAAAATTTCCTTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTAT 11838 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | || ||||||||||| ||||| |||||||| || || ||||| |||| ||| | Sbjct 11837 CTCATCAGGATAAATGCATCGGCCAAACCCTGAACACCTATTCCGATGGGTCGATGACGT 11778 Query 69136 TTATTTGAACTTTCAGC 69152 ||||| || |||||||| Sbjct 11777 TTATTCGATCTTTCAGC 11761 >seq4713 Length=17327 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || |||||||||| || || ||| | ||||| ||||| || || || || | ||| Sbjct 2584 TAAGTTTCATAAGTGCCGAACTTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTGCATAA 2643 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||||||||||||||| | ||| || | | |||||| | || || || || Sbjct 2644 TAAATTGTTTCGAAAATTTCCTTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTAT 2703 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | |||||||||||||| ||||| || ||||| || || ||||| |||| ||| | Sbjct 2704 CTCATCAGAATAAATGCATCGGCCAAACCTTGAACACCTATTCCGATGGGTCGATGACGT 2763 Query 69136 TTATTTGAACTTTCAGC 69152 ||||| || |||||||| Sbjct 2764 TTATTCGATCTTTCAGC 2780 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/222 (71%), Gaps = 9/222 (4%) Strand=Plus/Plus Query 70272 GATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTAC 70331 ||| |||||| | ||||| ||| |||||| || ||| | | ||||| | ||| || Sbjct 15011 GATCATCGGACAATGTTTATTCGTTTGAGGATTTACCCAGTCGTACAAATCCTGCATAAC 15070 Query 70332 ATCACTAAATAGtttt-tttGTTTCCTTGTGTAAATT--TGATATGGCTATTCTGGCTGC 70388 | | ||| ||||| |||||||| ||||||||||| ||| | ||||| ||||| || Sbjct 15071 TTG-CGAAAAGGTTTTCTTTGTTTCTTTGTGTAAATTACTGACA--GCTATCCTGGCGGC 15127 Query 70389 TAGAATAGCATAGTCAGGATGTTGTGTAGTACA-AGTAGCTGCTATTTCCGCAGCTAACG 70447 || | || || || |||||| || || ||| ||||| || |||| ||||| || Sbjct 15128 TAATGTTGCGTAATCTGGATGTATTGCAG-ACATCGTAGCAGCGGTTTCGGCAGCCAAGT 15186 Query 70448 TATCTAATTCTATAGTTGTAACTCCGTTATATA-GCCCTTGA 70488 | |||| ||| | ||||| || || || || | ||||| || Sbjct 15187 TGTCTAGTTCAACGGTTGTTACACCTTTGTAGAGGCCCTCGA 15228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686371834804680