Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2525 107 2e-18 seq4826 100 2e-16 seq4713 96.9 3e-15 seq391 96.9 3e-15 seq6174 82.4 6e-11 >seq2525 Length=27391 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 ||||||| | || | ||||||||||| ||||| | || || || || ||| ||| | Sbjct 2826 ACCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGT 2885 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 ||||| | |||| | ||||| | || ||||||||||| ||| || | ||||| |||| Sbjct 2886 TTTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAA 2945 Query 27227 AGTTTTCACAAAGATTTGCATA 27248 ||||||||| |||||||||||| Sbjct 2946 AGTTTTCACGAAGATTTGCATA 2967 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 |||| ||| | || |||||||||||||| ||||| | || |||||||| ||||||| Sbjct 5543 TACCCGCGAATATCAGACGCTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGG 5602 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 | || | | |||| | || || | | ||| || || || || || | |||||| || | Sbjct 5603 TCTTGACGTTTTCGATGGTATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGA 5662 Query 27226 GAGTTTTCACAAAGATTTGCAT 27247 | ||||||||||| |||||||| Sbjct 5663 GCGTTTTCACAAAAATTTGCAT 5684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| | |||||||||||| ||||| | || ||||| || |||||| Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 | || | | |||| | ||||| | | || ||||||| ||| || | |||||| ||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || || |||||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCAT 3759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| ||||| |||||||| || ||| || ||||| |||||||| |||||| Sbjct 2968 CCGCCGCGCAGACGCAACACCAAATGCAAGGTACTTTCCTTTTGGATATTGTAATCGCTC 3027 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 | | | ||| ||||||| ||||||||||| Sbjct 3028 AAGGTCCGCCCGTCTTCCAGCTGTTTACC 3056 >seq4826 Length=16944 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| |||||||| ||||| |||||||| | || || || |||||||| ||||| ||| Sbjct 6821 GCCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGA 6880 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | || ||||||| | ||||||||||||| |||| ||||| ||||||||||| || Sbjct 6881 TAGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGG 6940 >seq4713 Length=17327 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 ||||||||||| || ||||| || |||| | ||| | |||||| || | ||| ||| Sbjct 11659 GGACATTCGCTTGGGCACATGAGACACCAGTCTTCGTCGTCTTCAACGCGTTGCATGAAC 11718 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 ||||| ||||||||||| ||||| | || || | ||| | || ||| |||| | Sbjct 11719 AAATCTGGCACCCATAAAGCGTAAATGAGGTCGCGCGCTCTCAAGTCGTCTTTACCTGTT 11778 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTG 131780 | || ||||| | |||||||| | ||||| || ||||| || ||||| || |||| Sbjct 11779 CTCTTGTTCAATTCCAAAAAGTCGAGGATGTCTGCGTGCCACGGCTCCAAGTATACTG 11836 >seq391 Length=62077 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 ||||||| | || | ||||||||||| ||||| | |||||| ||||| || ||| | Sbjct 21302 ACCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGT 21243 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 ||||| | |||| | ||| || | | |||||||||| || || | ||| || |||| Sbjct 21242 TTTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAA 21183 Query 27227 AGTTTTCACAAAGATTTGCAT 27247 |||||| || ||||||||||| Sbjct 21182 AGTTTTAACGAAGATTTGCAT 21162 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 |||||||| |||| | || |||||||||||||| | || |||||||| ||||||| Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| | | |||| | ||| || | | || || || | || |||| ||| || ||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || |||||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 ||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||| || Sbjct 25183 ATTGCCTCCTCGCAAGCGCAGTACCAAATGTAACGTGCTCTCTTTTTGAATATTGTAATC 25124 Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || | |||| ||||||| | ||| || || Sbjct 25123 CGACAAGGTGCGTCCGTCTTCTAACTGCTTGCC 25091 >seq6174 Length=13620 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 || ||||||| || ||||| || |||| | |||| | | ||| |||| |||||| Sbjct 10217 GGGCATTCGCCCGGGCACATAAGGCACCAATCACCGTCATCTCGAACGCGCTGCATAAAT 10158 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | ||| || | ||| || ||||| || ||||| | ||| |||||| | || || Sbjct 10157 AGATCAGGGATCCACAAGGCGTAGAAAAGATCCCGAGCCCGCAACTCTTCCTTGCCTGTA 10098 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATA 131775 |||| |||| |||||| || || ||||| || ||||| ||||||||||| Sbjct 10097 TTTTTGCGTAAATCTAAAAATTCGAAGATGTCAGCGTGCCACGGTTCCAAATA 10045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424610527881144