Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq391 114 1e-20 seq4826 82.4 9e-11 seq2525 82.4 9e-11 >seq391 Length=62077 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| | || ||||||||||| || |||||||||||| | Sbjct 22047 ATGCAAATTTTTGTCAAGACTTTGACTGGCAAGACTATCACCCTTGAGGTTGAGCCGTCG 22106 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || | || |||||||| || || ||||| |||||||| || Sbjct 22107 GATACGATTGAGAATGTTAAAACCAAGATTCAGGATAAAGAAGGAATCCCTCCAGATCAA 22166 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 || || || ||||| |||||||| Sbjct 22167 CAACGCCTGATTTTCGCTGGTAA 22189 >seq4826 Length=16944 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| || || || ||||||||||| || ||||| || | || || | ||| Sbjct 6946 GGCATCCCTCCGGATCAACAACGTCTAATTTTCGCCGGTAAACAGTTGGAAGACGGACGT 6887 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || ||| | || || || | |||||||| || ||||||||| | || ||||| | ||| Sbjct 6886 ACGCTATCCGATTACAACATTCAAAAGGAGTCGACTCTTCATTTGGTGTTGCGATTGCGC 6827 Query 27628 GGTGG 27632 ||||| Sbjct 6826 GGTGG 6822 >seq2525 Length=27391 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || || |||||||| || || ||| | || || ||| | Sbjct 3760 AATGCAAATTTTCGTAAAAACCCTGACCGGCAAAACGATCACTTTAGAAGTCGAGCCGTC 3701 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||| | || ||||| ||||| || || || || || || || Sbjct 3700 GGACACGATCGAAAACGTAAAGACCAAGATTCAAGACAAAGAAGGCATCCCGCCCGATCA 3641 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||| | ||||||||||||||| || Sbjct 3640 ACAGCGTTTGATTTTTGCTGGTAAGTAA 3613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569864581231440