Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4826 104 1e-17 seq391 87.8 1e-12 seq2525 86.0 4e-12 >seq4826 Length=16944 Score = 104 bits (114), Expect = 1e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||||||||||||| ||||| ||||||||||||||| ||||| || || || || || Sbjct 6834 CGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGATAGCGTACGTCCG 6893 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| | ||||||||||| || |||| ||| ||||| ||||| || Sbjct 6894 TCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGG 6940 >seq391 Length=62077 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 |||||||| ||||||||||| ||||| ||||| || | ||||| |||||| ||| || Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCT-TGAATCTT 22452 Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 ||||| ||| | || || || || | |||||||||| ||| ||||| || || | Sbjct 22451 CGTTTTTACGTTCTCGATGGTATCGGACGGT-TCCACTTCCAAGGTGATCGTCTTGCCCG 22393 Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707 | || ||||| || ||||| |||||| Sbjct 22392 TCAAAGTTTTGACGAAAATTTGCATG 22367 >seq2525 Length=27391 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| |||| |||||||| |||||||| | ||| || || ||| ||| ||| Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCT-TGAATTTT 4148 Query 34624 TGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || || | || ||||| ||| ||||||| || || ||||||||||| Sbjct 4149 CGTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGT 4208 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | |||||| |||||||| ||||| Sbjct 4209 CAGCGTTTTAACAAAAATTTGCAT 4232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314489722639121