Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq391 131 1e-25 seq4826 127 2e-24 seq2525 114 1e-20 >seq391 Length=62077 Score = 131 bits (144), Expect = 1e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || || || |||||| |||| |||||| | || || | ||||||||||| Sbjct 22364 CGGCATGCAAATTTTCGTCAAAACTTTGACGGGCAAGACGATCACCTTGGAAGTGGAACC 22423 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| | || |||| || ||| || |||||||||||||| |||||||| || || Sbjct 22424 GTCCGATACCATCGAGAACGTAAAAACGAAGATTCAAGACAAAGAGGGCATACCTCCGGA 22483 Query 27104 TCAACAGCGTTTAATATACGCCGGCAA 27130 |||||| |||||||||| |||||| || Sbjct 22484 TCAACAACGTTTAATATTCGCCGGTAA 22510 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| ||||| || || |||| || || ||||| |||||||| Sbjct 23629 ATGCAAATTTTTGTCAAAACGCTGACGGGAAAAACTATAACGCTGGAAGTCGAACCGTCG 23688 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| |||||| || |||||||||||||| ||||| ||||| Sbjct 23689 GACACGATCGAAAACGTCAAGACAAAAATCCAGGACAAAGAAGGCATTCCACCAGATCAG 23748 Query 27108 CAGCGTTTAATATACGCCGG 27127 || |||||||| | ||| || Sbjct 23749 CAACGTTTAATCTTCGCTGG 23768 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| |||| || || | || || | |||||||| ||||| Sbjct 22653 CATGCAGATTTTCGTCAAAACGTTGACGGGGAAAACCATCACGTTGGAAGTGGAGCCGTC 22712 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | |||||| ||||||||| || ||||||||||| || || ||||| Sbjct 22713 TGACACGATCGAAAACGTCAAAACAAAAATTCAGGATAAAGAAGGCATTCCGCCGGATCA 22772 Query 27107 ACAGCGTTTAATATACGCCGGCAA 27130 || ||||| || | ||| || || Sbjct 22773 GCAACGTTTGATCTTCGCTGGTAA 22796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| | || |||||| | || || | ||||| ||||||||| Sbjct 24271 ATGCAAATTTTCGTCAAAACGTTAACGGGCAAGACGATCACGTTGGAAGTAGAACCGTCC 24330 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||| |||||||||||||| || ||||| |||||| Sbjct 24331 GACACAATTGAAAATGTTAAAACGAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 24390 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 || || | || | ||| || || Sbjct 24391 CAACGGCTGATCTTCGCTGGTAA 24413 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAACATTCAAAAGGAGTCGAC 27184 ||||| ||| | |||||| || || |||| |||||||| || |||||||| || ||||| Sbjct 22564 GGCAAGCAACTCGAAGACGGT-CGTACGTTATCCGATTATAATATTCAAAAAGAATCGAC 22622 Query 27185 CTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||||||||| |||||||| Sbjct 22623 GTTGCATTTGGTTTTGCGTTTGCGCGGTGGCAT 22655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || || | || || | ||||| ||||| || Sbjct 17592 ATGCAGATTTTCGTGAAAACGTTGACAGGAAAAACGATCACGTTAGAAGTCGAACCTTCG 17651 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || |||||||||||||| ||||| || || ||||||||| Sbjct 17652 GACACGATTGAAAACGTGAAGACTAAAATTCAAGACAAGGAAGGTATCCCGCCCGATCAA 17711 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 || | || || | |||||| || Sbjct 17712 CAAAGATTGATTTTCGCCGGTAA 17734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || |||||| ||||||| || | || || | ||||| || ||||| Sbjct 21161 CATGCAAATCTTCGTTAAAACTTTGACCGGTAAAACCATCACGTTAGAAGTTGAGCCGTC 21220 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || ||| ||||||||||| || || || || || |||||||| Sbjct 21221 TGATACTATCGAAAACGTGAAAACCAAAATTCAAGATAAGGAGGGTATCCCGCCCGATCA 21280 Query 27107 ACAGCGTTTAATATACGCCGG 27127 |||||| || || | |||||| Sbjct 21281 ACAGCGCTTGATCTTCGCCGG 21301 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || || || ||||| |||| || || |||| || | || || || || Sbjct 21708 CGGCATGCAAATTTTCGTCAAAACCTTGACTGGGAAAACTATCACGTTGGAGGTCGAGCC 21767 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| | ||||| | || ||| || || ||||| |||||||||||||| || || Sbjct 21768 GTCCGATACTATTGAAAACGTAAAAACCAAGATCCAAGATAAAGAAGGCATACCGCCGGA 21827 Query 27104 TCAACAGCGTTTAATATACGCCGGCAA 27130 |||||| || || || | ||||| || Sbjct 21828 TCAACAACGCTTGATTTTTGCCGGTAA 21854 >seq4826 Length=16944 Score = 127 bits (140), Expect = 2e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27088 AAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTT 27147 ||||||| || || |||||||| ||| |||| | |||||| ||||| ||||||||| | Sbjct 6948 AAGGCATCCCTCCGGATCAACAACGTCTAATTTTCGCCGGTAAACAGTTGGAAGACGGAC 6889 Query 27148 CGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 || | ||||||||||||||||||||||||||||| | |||||||| ||||| |||| Sbjct 6888 GTACGCTATCCGATTACAACATTCAAAAGGAGTCGACTCTTCATTTGGTGTTGCGATTGC 6829 Query 27208 GGGGTGGC 27215 | |||||| Sbjct 6828 GCGGTGGC 6821 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| |||| || || ||||||| |||||||| |||||||| Sbjct 7337 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACTATTACCCTTGAAGTCGAACCGTCA 7278 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 || |||| || | ||||| |||||||||||| |||||||| Sbjct 7277 GATACGATCGAAAATGTCAAGACAAAAATTCAAGATAAAGAAGG 7234 >seq2525 Length=27391 Score = 114 bits (126), Expect = 1e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| ||||||||||| | || ||| | ||||| || ||||| Sbjct 3759 ATGCAAATTTTCGTAAAAACCCTGACCGGCAAAACGATCACTTTAGAAGTCGAGCCGTCG 3700 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || |||||||||||||||||||| || ||||||||| Sbjct 3699 GACACGATCGAAAACGTAAAGACCAAGATTCAAGACAAAGAAGGCATCCCGCCCGATCAA 3640 Query 27108 CAGCGTTTAAT 27118 |||||||| || Sbjct 3639 CAGCGTTTGAT 3629 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| ||||| || |||||||| | ||||| ||||| |||||||| || Sbjct 5685 CATGCAAATTTTTGTGAAAACGCTCACCGGCAAAACAATTACGCTTGAGGTGGAACCTTC 5626 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| || || ||||| ||||||||||| || |||||||| Sbjct 5625 GGATACCATCGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGCATCCCGCCCGATCA 5566 Query 27107 ACAGCGTTTAATATACGCCGG 27127 ||||||| | |||| ||| || Sbjct 5565 ACAGCGTCTGATATTCGCGGG 5545 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| ||||||||||| | || ||| | ||||| ||||| || Sbjct 2966 ATGCAAATCTTCGTGAAAACTTTGACCGGCAAGACGATCACTTTAGAAGTTGAACCCTCG 2907 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || ||| ||||| |||||||| ||||| || || || |||||| Sbjct 2906 GACACGATCGAAAACGTGAAAACCAAAATCCAAGACAAGGAAGGAATTCCGCCTGATCAA 2847 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| || || | |||||| Sbjct 2846 CAGCGATTGATCTTCGCCGG 2827 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||| ||||| | || || | ||||| || |||||| Sbjct 4569 ATGCAAATTTTTGTCAAAACGTTGACTGGCAAAACGATAACGTTGGAAGTAGAGCCGTCC 4510 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| |||||| ||||||||||||||||| || || ||||||||||| Sbjct 4509 GATACGATCGAGAACGTCAAAACGAAAATTCAAGACAAAGAGGGTATCCCACCCGATCAG 4450 Query 27108 CAGCGTTTAATATACGCCGG 27127 || ||||| || | ||| || Sbjct 4449 CAACGTTTGATTTTCGCAGG 4430 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || || || |||||||| || || ||| | ||||| | ||||| ||||| Sbjct 5397 CGGCATGCAAATTTTCGTGAAAACTCTCACGGGAAAGACAATTACGTTGGAAGTCGAACC 5338 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | ||||||| || || ||| |||||||||||||||||||| || || || Sbjct 5337 ATCTGACACAATTGAGAACGTGAAGACAAAGATTCAAGACAAAGAAGGCATCCCGCCAGA 5278 Query 27104 TCAACAGCGTTTAATATACGCCGG 27127 ||| || ||| | || | |||||| Sbjct 5277 TCAGCAACGTCTTATCTTCGCCGG 5254 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||||||| || | ||||| | ||||| || |||||| Sbjct 4232 ATGCAAATTTTTGTTAAAACGCTGACCGGTAAAACCATTACGTTGGAAGTCGAGCCGTCC 4173 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||||||||| |||||||| || || || |||||| Sbjct 4172 GACACTATCGACAATGTCAAGACGAAAATTCAAGATAAAGAAGGAATTCCGCCGGATCAA 4113 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 ||||| |||| | ||||| || Sbjct 4112 CAGCGCCTAATCTTTGCCGGTAA 4090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434578418850240