Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4826 96.9 2e-15 seq391 86.0 4e-12 seq2525 82.4 5e-11 >seq4826 Length=16944 Score = 96.9 bits (106), Expect = 2e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| || ||||| ||||||| ||||| ||||| ||||| |||| ||| | | ||||| Sbjct 6935 GGATCAACAACGTCTAATTTTCGCCGGTAAACAGTTGGAAGACGGACGTACGCTATCCGA 6876 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||||| ||||| ||| ||| | |||||||| ||||| ||||| || |||| Sbjct 6875 TTACAACATTCAAAAGGAGTCGACTCTTCATTTGGTGTTGCGATTGCGCGGTGGCG 6820 >seq391 Length=62077 Score = 86.0 bits (94), Expect = 4e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || || || || || |||| ||||| |||||| |||||||| || |||||||||||||| Sbjct 25091 GGCAAGCAGTTAGAAGACGGACGCACCTTGTCGGATTACAATATTCAAAAAGAGAGCACG 25150 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || |||||||| |||| ||||| || ||| Sbjct 25151 TTACATTTGGTACTGCGCTTGCGAGGAGGC 25180 >seq2525 Length=27391 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || |||||||| || || | || | |||| |||||||||||| |||||||| Sbjct 3855 TTTTCAGGGAAACAATTAGAAGATGGCCGTACCTTGAGCGATTACAACATTCAAAAAGAA 3796 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||| | || ||||| ||||||| || Sbjct 3795 AGCACTTTGCATCTCGTACTGCGTCTGCGTGGTGG 3761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355591172465799