Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2525 118 2e-21 seq391 98.7 2e-15 >seq2525 Length=27391 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | || ||||| ||||| |||| |||||||||||| ||||| || | Sbjct 2827 CCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTT 2886 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||||||||| ||||| ||| |||||| || | |||||||||||| || || | | Sbjct 2887 TTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAA 2946 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 2947 GTTTTCACGAAGATTTGCAT 2966 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||||||||| ||||| || || || || | ||||| ||||| || |||||| Sbjct 5254 CCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCTTTGTC 5313 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| ||| || || | || || ||||||||||||||| Sbjct 5314 TTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCGTGAGA 5373 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 5374 GTTTTCACGAAAATTTGCAT 5393 >seq391 Length=62077 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | ||||| || || || |||| ||||| ||||||||||| |||||| Sbjct 23768 CCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGAT-TTTTGT 23710 Query 211035 -TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || ||||||||||| ||||| || ||| || || || || || || |||||||| || Sbjct 23709 CTTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAG 23650 Query 211094 AGTCTTTACAAACACCTGCAT 211114 || || ||||| | ||||| Sbjct 23649 CGTTTTGACAAAAATTTGCAT 23629 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| || ||||||||||| || ||||| | |||||| || ||||| ||||| Sbjct 22189 TTACCAGCGAAAATCAGGCGTTGTTGATCTGGAGGGATTCCTTCTTTATCCTGAATCTTG 22130 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || || || || || || |||||||| || ||||| ||||| || || Sbjct 22129 GTTTTAACATTCTCAATCGTATCCGACGGCTCAACCTCAAGGGTGATAGTCTTGCCAGTC 22070 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | |||||| ||||| | ||||| Sbjct 22069 AAAGTCTTGACAAAAATTTGCAT 22047 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || |||||||| || || |||| ||||| ||||| ||||| || Sbjct 24414 CTTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTT 24355 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || ||||| || ||| || || | ||||||||||| ||||| Sbjct 24354 CGTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGT 24295 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | || || || || | |||||| Sbjct 24294 TAACGTTTTGACGAAAATTTGCATT 24270 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 || ||| || |||||||| | ||||| || || || |||| ||||| || ||||| || Sbjct 22800 CTTCTTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAAT 22741 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| ||| ||||||||||| |||||||| || || || | ||||| || || || Sbjct 22740 TTTTGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCC 22681 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| | || || || || | |||||| Sbjct 22680 CGTCAACGTTTTGACGAAAATCTGCAT 22654 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || | |||||||| || ||||| | || || ||||| || ||||| Sbjct 22511 CTTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTT 22452 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| |||||||| || || ||| || || | ||||||||||| ||||| Sbjct 22451 CGTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGT 22392 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | ||||| Sbjct 22391 CAAAGTTTTGACGAAAATTTGCAT 22368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158223223302005