Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2525 107 1e-18 seq391 93.3 3e-14 seq4826 89.7 3e-13 >seq2525 Length=27391 Score = 107 bits (118), Expect = 1e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| |||||||| || || |||||||||||| | ||||| || | | Sbjct 3760 AATGCAAATTTTCGTAAAAACCCTGACCGGCAAAACGATCACTTTAGAAGTCGAGCCGTC 3701 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| |||| || ||| ||||||||||| | ||||| ||||| Sbjct 3700 GGACACGATCGAAAACGTAAAGACCAAGATTCAAGACAAAGAAGGCATCCCGCCCGATCA 3641 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 ||||||||| || ||||| || || Sbjct 3640 ACAGCGTTTGATTTTTGCTGGTAA 3617 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| |||||||| || || || ||||| || || | ||||| || | | Sbjct 4233 AATGCAAATTTTTGTTAAAACGCTGACCGGTAAAACCATTACGTTGGAAGTCGAGCCGTC 4174 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || || |||| || || |||||||| | ||||| |||| Sbjct 4173 CGACACTATCGACAATGTCAAGACGAAAA-TTCAAGATAAAGAAGGAATTCCGCCGGATC 4115 Query 23729 AACAGCGTTTAATATTTGCCGGCAA 23753 ||||||| |||| |||||||| || Sbjct 4114 AACAGCGCCTAATCTTTGCCGGTAA 4090 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| | || || || ||||||||| | |||||||| || || Sbjct 2966 ATGCAAATCTTCGTGAAAACTTTGACCGGCAAGACGATCACTTTAGAAGTTGAACCCTCG 2907 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| ||||| ||||| ||||| | ||||| |||||| Sbjct 2906 GACACGATCGAAAACGTGAAAACCAAAATCCAAGACAAGGAAGGAATTCCGCCTGATCAA 2847 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| || || || ||||| Sbjct 2846 CAGCGATTGATCTTCGCCGG 2827 Score = 86.0 bits (94), Expect = 4e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| ||||||||||| || || || | ||||| || | | Sbjct 5393 ATGCAAATTTTCGTGAAAACTCTCACGGGAAAGACAATTACGTTGGAAGTCGAACCATCT 5334 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || ||||| | || ||||||||||| | ||||||||||| Sbjct 5333 GACACAATTGAGAACGTGAAGACAAAGA-TTCAAGACAAAGAAGGCATCCCGCCAGATCA 5275 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 || ||| | || || ||||| Sbjct 5274 GCAACGTCTTATCTTCGCCGG 5254 >seq391 Length=62077 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| | || |||||||||||||| | ||||| || | Sbjct 17589 AATATGCAGATTTTCGTGAAAACGTTGACAGGAAAAACGATCACGTTAGAAGTCGAACCT 17648 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| |||||| | || |||||| ||||| |||||| | ||||| ||| Sbjct 17649 TCGGACACGATTGAAAACGTGAAGACTAAAATTCAAGACAAGGAAGGTATCCCGCCCGAT 17708 Query 23728 CAACAGCGTTTAATATTTGCCGGCAA 23753 ||||| | || || || ||||| || Sbjct 17709 CAACAAAGATTGATTTTCGCCGGTAA 17734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| | ||||| || |||||||| | ||||| || | | Sbjct 24270 AATGCAAATTTTCGTCAAAACGTTAACGGGCAAGACGATCACGTTGGAAGTAGAACCGTC 24329 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||||| | ||||||| |||| | |||||||||||| | || ||||||| Sbjct 24330 CGACACAATTGAAAATGTTAAAACGAAAA-TCCAAGACAAAGAAGGTATTCCACCAGATC 24388 Query 23729 AACAGCGTTTAATATTTGCCGGCAA 23753 |||| || | || || || || || Sbjct 24389 AACAACGGCTGATCTTCGCTGGTAA 24413 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| || ||||||||||| || || || ||||| || | || Sbjct 23629 ATGCAAATTTTTGTCAAAACGCTGACGGGAAAAACTATAACGCTGGAAGTCGAACCGTCG 23688 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || |||||| ||||||||||| | || |||||||| Sbjct 23689 GACACGATCGAAAACGTCAAGACAAAAATCCAGGACAAAGAAGGCATTCCACCAGATCAG 23748 Query 23731 CAGCGTTTAATATTTGCCGG 23750 || |||||||| || || || Sbjct 23749 CAACGTTTAATCTTCGCTGG 23768 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | ||||| || |||||||| | ||||| || | | Sbjct 22368 ATGCAAATTTTCGTCAAAACTTTGACGGGCAAGACGATCACCTTGGAAGTGGAACCGTCC 22427 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | ||||| || ||| |||||||| || |||| || |||||| Sbjct 22428 GATACCATCGAGAACGTAAAAACGAAGATTCAAGACAAAGAGGGCATACCTCCGGATCAA 22487 Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753 || ||||||||||| ||||| || Sbjct 22488 CAACGTTTAATATTCGCCGGTAA 22510 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | ||||| ||||| ||||| | ||||| || | | Sbjct 22654 ATGCAGATTTTCGTCAAAACGTTGACGGGGAAAACCATCACGTTGGAAGTGGAGCCGTCT 22713 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| ||||||| || |||||||| | ||||| ||||| Sbjct 22714 GACACGATCGAAAACGTCAAAACAAAAATTCAGGATAAAGAAGGCATTCCGCCGGATCAG 22773 Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753 || ||||| || || || || || Sbjct 22774 CAACGTTTGATCTTCGCTGGTAA 22796 >seq4826 Length=16944 Score = 89.7 bits (98), Expect = 3e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 23711 AAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAAC 23770 |||| | || || |||||||| ||| |||| || ||||| ||||| ||||||||| || Sbjct 6948 AAGGCATCCCTCCGGATCAACAACGTCTAATTTTCGCCGGTAAACAGTTGGAAGACGGAC 6889 Query 23771 GCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGC 23830 | || || |||||||||||| ||||| ||||| || | ||||| || || | |||| Sbjct 6888 GTACGCTATCCGATTACAACATTCAAAAGGAGTCGACTCTTCATTTGGTGTTGCGATTGC 6829 Query 23831 GAGGAGG 23837 | || || Sbjct 6828 GCGGTGG 6822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337751979328796