Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq19762 206 6e-48 seq2525 136 9e-27 seq391 131 4e-25 seq12543 93.3 1e-13 seq11573 93.3 1e-13 seq49421 84.2 5e-11 >seq19762 Length=3045 Score = 206 bits (228), Expect = 6e-48 Identities = 219/286 (77%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||| |||| | ||| ||||||| || ||||| |||||||| | Sbjct 1363 ACATTATATTTAGTATTCTCTATATTTGCTGGTATGATTGGTACAGCTTTTTCTATTTTA 1304 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAG-TGGTAATAGCCAACTTTA 7559 || || ||||||||||| | ||| ||| ||| |||| | |||| ||| |||||||| Sbjct 1303 ATTAGATTAGAATTAGCAGGTCCAGGTGTACAA-TATTTACATGGTGATAATCAACTTTA 1245 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 |||||||| ||||| || ||||| |||||||||||||||||| | |||||||| | | | Sbjct 1244 TAACGTTATCATTACAGCACATGCATTTGTTATGATTTTCTTTATGGTTATGCCTGCTTT 1185 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || |||| || || || |||||||||| || ||||||||||| || Sbjct 1184 AATTGGTGGTTTTGGTAATTATTTTGTACCAATAATGATTGGAGCACCTGATATGGCATT 1125 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 |||||| | || ||||| ||||| || ||| |||| ||||| ||| Sbjct 1124 TCCAAGATTAAATAATATTAGTTTCTGGTTATTACCACCTTCATTA 1079 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 ||||||||||||||||||| | |||||| |||||||||| || || ||||||||||| Sbjct 858 AATGGTAATTTATGCATAGTCATACCAGGAGCTCTCATATTTAAAATAGTAGTAATAAAA 917 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | | | |||||||| | |||||||||||| ||||||||||| Sbjct 918 TTAATTGCTCCTAACATACTACTTATACCTGATAAATGTAAACTAAAAATTGCTAAATCA 977 Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 || || || || || ||| | |||| || ||| || || || ||||| || || || Sbjct 978 ACTGATCCTCCTGAATGAAATCCAATTGATGATAATGGTGGATATACTGTCCATCCAGT 1036 Score = 102 bits (112), Expect = 2e-16 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||||||||| || ||||| | |||||||| | | |||||| ||||| | Sbjct 676 ATACTTCAGGATGACCAAAGAACCAGAAAAGGTGTTGATATAAAACAGGATCACCTCCTC 735 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||| ||||||| | || ||||||||| ||||||||| ||||| |||| Sbjct 736 CTGCTGGATCATAGAATGTAGTATTAAGATTTCTATCTGTTAATAACA 783 >seq2525 Length=27391 Score = 136 bits (150), Expect = 9e-27 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | ||| ||||| || |||||||| ||||||||||||||||| || Sbjct 2827 CCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTT 2886 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| |||||| ||||| |||| ||| || ||||| |||||||||||||| |||||| Sbjct 2887 TTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAA 2946 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 2947 GTTTTCACGAAGATTTGCAT 2966 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||| ||||| || || ||||| || ||||| |||||||| |||||| | Sbjct 5254 CCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCTTTGTC 5313 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| || || ||||| || | ||| || || ||||| || ||||| ||||| | | Sbjct 5314 TTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCGTGAGA 5373 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 5374 GTTTTCACGAAAATTTGCAT 5393 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| || || || ||||| |||||||| || ||||| || ||||||||||| | Sbjct 5545 CCCGCGAATATCAGACGCTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGGTC 5604 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || ||||||||| || || | |||||| || | ||| || || ||||| || | Sbjct 5605 TTGACGTTTTCGATGGTATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGAGC 5664 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 ||||| | || | |||||| || Sbjct 5665 GTTTTCACAAAAATTTGCATGTT 5687 >seq391 Length=62077 Score = 131 bits (144), Expect = 4e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||||||||| || |||||||| || || ||||||||||| ||||||||||| || Sbjct 24414 CTTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTT 24355 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| ||| || ||||| || | ||| || || |||||||||||||||||||| Sbjct 24354 CGTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGT 24295 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || ||||| | ||| | ||||||| Sbjct 24294 TAACGTTTTGACGAAAATTTGCATT 24270 Score = 118 bits (130), Expect = 3e-21 Identities = 117/150 (78%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||| || | || |||||| |||||||| ||||||||||||||||| || || Sbjct 17735 CTTACCGGCGAAAATCAATCTTTGTTGATCGGGCGGGATACCTTCCTTGTCTTGAATTTT 17676 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||| || ||||| || | ||| || |||||||||||||| || || || Sbjct 17675 AGTCTTCACGTTTTCAATCGTGTCCGAAGGTTCGACTTCTAACGTGATCGTTTTTCCTGT 17616 Query 225690 CAAAGTTTTTATGAACACTTGCAT-TTTAT 225718 ||| ||||| | ||| | ||||| ||||| Sbjct 17615 CAACGTTTTCACGAAAATCTGCATATTTAT 17586 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||| || | |||||||| || || || || || || |||||||| ||||| Sbjct 22511 CTTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTT 22452 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || |||||||| || || | |||||| || || ||||||||||||||||| Sbjct 22451 CGTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGT 22392 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||||||||| | ||| | |||||| Sbjct 22391 CAAAGTTTTGACGAAAATTTGCAT 22368 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | || ||||| |||||||| ||||| ||||| ||||| || || Sbjct 21301 CCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGTT 21242 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| |||||| || || || | || || ||||||||||| || || || |||||| Sbjct 21241 TTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAAA 21182 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 21181 GTTTTAACGAAGATTTGCAT 21162 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 || ||| ||||||||||| | ||||| || || |||||||| ||||| || || || || Sbjct 22800 CTTCTTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAAT 22741 Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| || || |||||| ||||| || | ||||| || |||||||| || || || Sbjct 22740 TTTTGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCC 22681 Query 225687 CGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||| | ||| | ||||| Sbjct 22680 CGTCAACGTTTTGACGAAAATCTGCAT 22654 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| | ||||| || || || ||||| ||||| ||||| ||||| ||| | Sbjct 23768 CCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGTC 23709 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||| ||||| || | ||| || || | ||| || || || ||||||| Sbjct 23708 TTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAGC 23649 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | || | |||||| Sbjct 23648 GTTTTGACAAAAATTTGCAT 23629 >seq12543 Length=5972 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| | || |||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 633 TGAGAGGACGACCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 691 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 |||||| |||| || |||||||||||||||| ||||| || |||| Sbjct 692 CAGTGGGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATG 736 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||||| |||||| || || ||||| ||| |||||| |||||| ||||||||| Sbjct 1333 ATGTCAAGGGTAGGTAAGGTTTTTCGCGTTGCATCGAATTAATCCACATCATCCACCGCT 1274 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | |||||| || ||||||||||||| |||||| |||| | | |||| || Sbjct 1273 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGT 1214 Query 7844 AATATTTACGCGTTAGCT 7861 | || ||||||||||| Sbjct 1213 CAACTTCACGCGTTAGCT 1196 >seq11573 Length=6636 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||| | |||| ||| |||||||||||||| |||||||||| | | | Sbjct 2104 TTGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATAATCCACCGCTTGTGCGGGCC 2045 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 |||||| || |||||||||| || |||||| ||||| | | ||||||| Sbjct 2044 CCCGTCAATTCCTTTGAGTTTCAAACTTGCGTTCGTACTCCCCAGGTGG 1996 >seq49421 Length=642 Score = 84.2 bits (92), Expect = 5e-11 Identities = 120/168 (71%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 || ||| ||| |||| || || || || | ||||| |||||| | |||||||| | Sbjct 341 TATAACAGTATCGTTACAGCTCACGCACTTTTAATGATATTCTTTATGGTTATGCCTGCC 282 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 | || || || ||||| |||| | | ||||||||| | || | |||||||||||| Sbjct 281 TTAATCGGAGGATTCGGTAATTTCCTTATGCCTTTAATGGTAGGAGGTCCTGATATGGCA 222 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || ||||| | || ||||| || ||| |||| |||| ||| |||| Sbjct 221 TTCCCAAGATTAAATAATATTAG--TTTCATTATTACCACCTAGCTTA 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191575678040678