Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3755 188 6e-43 >seq3755 Length=20876 Score = 188 bits (208), Expect = 6e-43 Identities = 252/345 (73%), Gaps = 4/345 (1%) Strand=Plus/Minus Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 || || |||||| ||||| || |||||||| | || | ||||| | |||||| || Sbjct 10514 ATAAGCTCGTTACTGAACGTCAAGCCGGGCATGAGGCCCCGTTTTTTTAACCAAAAAATC 10455 Query 4644 GCGGC-AAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGA 4702 | || ||| |||| ||||||||||||||||| |||||||| || || || || || Sbjct 10454 GACGCGAAACTACCC-GAAAAGAATATGCCTTCGACGGCGGCGAAAGCCACCAAACGTTC 10396 Query 4703 CCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAA 4761 ||||||| | | | ||| || ||||||||| || ||||| | |||||| || | || Sbjct 10395 GCCGAACGTCGATTG-TTTATCGGCAATCCATTTCAAAGCCCATTGAGCTTTCTTTTGAA 10337 Query 4762 CGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATAT 4821 |||| || | || | |||||| || || | | | |||||| | || || |||| | Sbjct 10336 CGCAAGGTAAAGTTTCTATAGCATTGAAAAGATGATCTTTTTCGACGGGATCGCGAATGT 10277 Query 4822 AAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATC 4881 | || || || |||| | ||||||||| ||||| |||||||| || ||||| ||||| | Sbjct 10276 AGGTTTCGATGAGTAAGGAATACATTTCGGAATGGATATTTTCGATTGCAATTTGAAAGC 10217 Query 4882 CGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 | ||||| || | |||||| || ||||| ||||| | | |||||| Sbjct 10216 CATAAAAACAACGAGCTTCCGTAACTTGCACTTCTTGAGAAAATC 10172 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 4255 ATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATAT 4314 ||||||| ||||| || || ||||||||||||| |||||||||||||||||||| | Sbjct 11518 ATTTTTGATATTCACCGACACGTCTTTCGAAGAAATTTGTTTTGCCTTCTAACGAAATGT 11459 Query 4315 TTTCCATAAAATCAAACGGATT 4336 ||||||||||| || ||||| Sbjct 11458 GCTCCATAAAATCGAAGGGATT 11437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426724115739821