Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3755 134 2e-26 seq6174 87.8 2e-12 >seq3755 Length=20876 Score = 134 bits (148), Expect = 2e-26 Identities = 264/383 (69%), Gaps = 18/383 (5%) Strand=Plus/Minus Query 48146 AAAATCACAATGAAGAC-CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 ||| ||| |||||| | | ||||| || || | |||||| || || | |||| Sbjct 10546 AAATTCAAAATGAACTCACCTCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGG 10487 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||| || || |||||||| | |||||| || | ||||||| || ||||||||||||| Sbjct 10486 GCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCGAAACTACCCGAAAAGAATATGC 10427 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG-TTGTGTATC--C 48321 |||| ||||| || || || | | || ||| | | ||| |||| |||| | Sbjct 10426 CTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCGAA-----CGTCGATTGTTTATCGGC 10372 Query 48322 A--CCGTTGT---GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 | || || ||||| | ||| ||||| | || ||||| | |||||||||||||| Sbjct 10371 AATCCATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGTAAAGTTTCTATAGCATT 10312 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATAC 48434 || ||| | |||||| | ||| || ||| || || || | || || |||| Sbjct 10311 GAAAAGATGATCTTTTTCGACGGGATCGCGAATGTAGGTTTCGATGAGTAAGGA--ATAC 10254 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 |||||||| || |||||||| ||||| || ||||| || |||||||| | ||||| || Sbjct 10253 ATTTCGGAATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAACAACGAGCTTCCGTA 10194 Query 48495 ATCTGTACCTCCGTACAAAATCG 48517 | || || || | ||||||| Sbjct 10193 ACTTGCACTTCTTGAGAAAATCG 10171 Score = 89.7 bits (98), Expect = 7e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 || ||| ||||||||||||||| |||||| | ||||| ||||| ||||||||||| || Sbjct 11525 ACGCCCGATTTTTGATATTCACCGACACGTCTTTCGAAGAAATTTGTTTTGCCTTCTAAC 11466 Query 47901 GATATATTTTCCATAAAATCAAATGGATT 47929 || || | ||||||||||| || ||||| Sbjct 11465 GAAATGTGCTCCATAAAATCGAAGGGATT 11437 >seq6174 Length=13620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182 || ||| |||||||||||||| |||| || || |||||||| || || ||||| | Sbjct 12260 TACTTGGAATTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 12201 Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 ||||| || ||||||||||||||||| || || || || ||||| || || Sbjct 12200 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCATCGGCGC 12150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694125768715680