Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3755 134 2e-26 seq6174 113 6e-20 seq4713 113 6e-20 >seq3755 Length=20876 Score = 134 bits (148), Expect = 2e-26 Identities = 259/378 (69%), Gaps = 8/378 (2%) Strand=Plus/Minus Query 46635 AAAATCACAATGAAGGC-CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 ||| ||| |||||| | | ||||| || || | |||||| || || | || | Sbjct 10546 AAATTCAAAATGAACTCACCTCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGG 10487 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| || || || ||||| | |||||| || | ||||||| || ||||||||||||| Sbjct 10486 GCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCGAAACTACCCGAAAAGAATATGC 10427 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCC 46810 |||| || || ||||| || || | | || ||| | | | | |||| ||||| Sbjct 10426 CTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCGAACGTCGATTGTTTATCGGCAATCC 10367 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | | |||||| | ||| || || | || ||||| | |||||||||||||| || | Sbjct 10366 ATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGTAAAGTTTCTATAGCATTGAAAA 10307 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTC 46928 || | |||||| | ||| || || || || || | || || ||||||||| Sbjct 10306 GATGATCTTTTTCGACGGGATCGCGAATGTAGGTTTCGATGAGTAAGGA--ATACATTTC 10249 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 ||||| || ||||| || || || ||||| || |||||||| | ||||| |||| || Sbjct 10248 GGAATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAACAACGAGCTTCCGTAACTTG 10189 Query 46989 TACCTCTGTACAAAATCG 47006 || ||| | ||||||| Sbjct 10188 CACTTCTTGAGAAAATCG 10171 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 || ||| |||||| |||||||| |||||| | ||||| ||||| ||||||||||| || Sbjct 11525 ACGCCCGATTTTTGATATTCACCGACACGTCTTTCGAAGAAATTTGTTTTGCCTTCTAAC 11466 Query 46390 GATATATTTTCCATAAAATCAAACGGATT 46418 || || | ||||||||||| || ||||| Sbjct 11465 GAAATGTGCTCCATAAAATCGAAGGGATT 11437 >seq6174 Length=13620 Score = 113 bits (124), Expect = 6e-20 Identities = 203/296 (69%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 75863 ATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATG---GTACAACATCCCAGAGA 75919 ||||| || ||| | ||||||||||||| | | | | || |||| ||| | | Sbjct 12056 ATTTTGTCACGTAGTGAATTCCAATCCCAAATTTTTAAAGTCGGTTTTACATTCCACATA 11997 Query 75920 TCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCC 75979 ||| | || | | | || | |||| || || | || ||||| ||||| ||| | Sbjct 11996 TCGAACTGCAAAGTGCCTTGGCTAATGGGGGAACCTTCGTAAGTTTCATAAGTGCCGAAC 11937 Query 75980 TTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTC 76039 ||||| | ||||||||||| || || || || || |||||||||||||||||||| | | Sbjct 11936 TTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTCCATAATAAATTGTTTCGAAAATTTCC 11877 Query 76040 TTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCT 76099 || || | | |||||| | |||||||| || | || ||||||||||| Sbjct 11876 TTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGGATAAATGCATCG 11817 Query 76100 GCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 || | |||||||| || || || || |||| ||| | ||||| || ||||||| Sbjct 11816 GCCAAACCCTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGATCTTTCAGC 11761 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| |||||||||||||| |||| ||| || |||||||| || || ||||| | || Sbjct 12257 TTGGAATTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAATGA 12198 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||| || ||||||||||||||||| || || || || ||||| || || Sbjct 12197 TTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCATCGGCGC 12150 >seq4713 Length=17327 Score = 113 bits (124), Expect = 6e-20 Identities = 203/296 (69%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 75863 ATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATG---GTACAACATCCCAGAGA 75919 ||||| || ||| | ||||||||||||| | | | | || |||| ||| | | Sbjct 2485 ATTTTGTCACGTAGTAAATTCCAATCCCAAATTTTTAAAGTCGGTTTTACATTCCACATA 2544 Query 75920 TCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCC 75979 || |||| | ||| || | |||| || || | || ||||| ||||| ||| | Sbjct 2545 TCAAATTGCAAAATGCCTTGGCTAATGGGGGAACCTTCGTAAGTTTCATAAGTGCCGAAC 2604 Query 75980 TTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTC 76039 ||||| | ||||||||||| || || || || | |||||||||||||||||||| | | Sbjct 2605 TTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTGCATAATAAATTGTTTCGAAAATTTCC 2664 Query 76040 TTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCT 76099 || || | | |||||| | |||||||| || | |||||||||||||| Sbjct 2665 TTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGAATAAATGCATCG 2724 Query 76100 GCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 || | || ||||| || || || || |||| ||| | ||||| || ||||||| Sbjct 2725 GCCAAACCTTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGATCTTTCAGC 2780 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/110 (77%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 75727 TTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 75786 |||||||||||| |||| ||| || |||||||| || || ||||| | ||||| || Sbjct 2290 TTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAATGATTCGTT 2349 Query 75787 GTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATA 75836 ||||||||||||||||| || || || || ||||| |||| | |||| Sbjct 2350 ATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCAT---TGCCGCTAATA 2396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712377090267840