Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2525 136 8e-27 seq391 118 2e-21 >seq2525 Length=27391 Score = 136 bits (150), Expect = 8e-27 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| |||||||| || ||||| ||| |||||| || |||||||||||||| || | | Sbjct 2827 CCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTT 2886 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| |||||||| | ||| ||||| | |||||||||||| || |||||| Sbjct 2887 TTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAA 2946 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 2947 GTTTTCACGAAGATTTGCAT 2966 Score = 98.7 bits (108), Expect = 2e-15 Identities = 82/98 (84%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AGC 282931 ||||||||||| || ||||| ||||| || |||||||||||||| |||||||| || | Sbjct 3761 CCACCACGCAGACGCAGTACGAGATGCAAAGTGCTTTCTTTTTGAATGTTGTAATCGCTC 3820 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 ||| || |||||||| |||| ||||||||| | ||||| Sbjct 3821 AAG-GTACGGCCATCTTCTAATTGTTTCCCTGAAAAGA 3857 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||| | || ||||| || |||||| || || || ||||| || || Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTC 4149 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | ||||||||||| || | |||||||| | || || || ||||| ||| Sbjct 4150 GTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTC 4209 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | || ||||| || || |||||| Sbjct 4210 AGCGTTTTAACAAAAATTTGCATT 4233 >seq391 Length=62077 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| || || ||||||||||| || || || ||||| |||||||| ||||| Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTTC 22451 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | ||||||| | ||||| || || || | ||| ||||| | ||||||||||| |||||| Sbjct 22450 GTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGTC 22391 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 ||||| || ||||| || ||||| Sbjct 22390 AAAGTTTTGACGAAAATTTGCAT 22368 Score = 116 bits (128), Expect = 8e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||| || ||||| | |||||| || ||| ||||| ||||||||||| || || Sbjct 17734 TTACCGGCGAAAATCAATCTTTGTTGATCGGGCGGGATACCTTCCTTGTCTTGAATTTTA 17675 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || ||| | || || |||||||||| ||||||||| | |||||||| || || ||| Sbjct 17674 GTCTTCACGTTTTCAATCGTGTCCGAAGGTTCGACTTCTAACGTGATCGTTTTTCCTGTC 17615 Query 283077 AAAGTCTTAACGAATATCTGCATTTTCAT 283105 || || || ||||| |||||||| || || Sbjct 17614 AACGTTTTCACGAAAATCTGCATATTTAT 17586 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| |||||||| || ||||| || ||| ||||||||||| ||||| || || | | Sbjct 21301 CCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGTT 21242 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | |||||||| || || | || ||||| | ||||| || ||||| |||||| Sbjct 21241 TTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAAA 21182 Query 283080 GTCTTAACGAATATCTGCAT 283099 || |||||||| || ||||| Sbjct 21181 GTTTTAACGAAGATTTGCAT 21162 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || ||||||| |||||||| || |||||||| || ||||||||||| || Sbjct 24413 TTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTC 24354 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | ||| || | || || ||||| || | ||| ||||| | ||||||||||| ||||| Sbjct 24353 GTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGTT 24294 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || || || ||||| || |||||| Sbjct 24293 AACGTTTTGACGAAAATTTGCATT 24270 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || |||||||| ||||| |||||||| || ||| || || || || ||||||||||| Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | ||||||| | || ||||| || || | ||||| || | ||||| || || || ||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| || ||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || |||||||||||||| || || |||||| || || || || || || ||| Sbjct 22796 TTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAATTTTT 22737 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | ||| ||| | ||||| ||||| || | || ||||| | ||||| || || |||||| Sbjct 22736 GTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGTC 22677 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| |||||||| Sbjct 22676 AACGTTTTGACGAAAATCTGCAT 22654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045900494655198