Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2525 134 3e-26 seq391 122 2e-22 seq4826 87.8 4e-12 >seq2525 Length=27391 Score = 134 bits (148), Expect = 3e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| ||||| || || || | || || ||| || ||| Sbjct 5390 CAAATTTTCGTGAAAACTCTCACGGGAAAGACAATTACGTTGGAAGTCGAACCATCTGAC 5331 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||||||| ||||||||||| ||||| || || |||||| Sbjct 5330 ACAATTGAGAACGTGAAGACAAAGATTCAAGACAAAGAAGGCATCCCGCCAGATCAGCAA 5271 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||||||||| Sbjct 5270 CGTCTTATCTTCGCCGG 5254 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||||||| | || || || |||||||| | || || ||| ||| ||| Sbjct 2963 CAAATCTTCGTGAAAACTTTGACCGGCAAGACGATCACTTTAGAAGTTGAACCCTCGGAC 2904 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| || || || ||||| |||||||| || || || || || Sbjct 2903 ACGATCGAAAACGTGAAAACCAAAATCCAAGACAAGGAAGGAATTCCGCCTGATCAACAG 2844 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||||||||| Sbjct 2843 CGATTGATCTTCGCCGG 2827 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || ||||||||||| | || || || || ||| Sbjct 3756 CAAATTTTCGTAAAAACCCTGACCGGCAAAACGATCACTTTAGAAGTCGAGCCGTCGGAC 3697 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||| ||||||||||| ||||| || || || || Sbjct 3696 ACGATCGAAAACGTAAAGACCAAGATTCAAGACAAAGAAGGCATCCCGCCCGATCAACAG 3637 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 3636 CGTTTGATTTTTGCTGGTAA 3617 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || ||||| || || | || || || || ||| Sbjct 4229 CAAATTTTTGTTAAAACGCTGACCGGTAAAACCATTACGTTGGAAGTCGAGCCGTCCGAC 4170 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||| || ||||| || ||| ||||| || ||||||||||| || ||||| || || Sbjct 4169 ACTATCGACAATGTCAAGACGAAA-ATTCAAGATAAAGAAGGAATTCCGCCGGATCAACA 4111 Query 178043 ACGACTTATCTTCGCCGGAAA 178063 || || ||||| ||||| || Sbjct 4110 GCGCCTAATCTTTGCCGGTAA 4090 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || |||||||| || | || || || || || Sbjct 4566 CAAATTTTTGTCAAAACGTTGACTGGCAAAACGATAACGTTGGAAGTAGAGCCGTCCGAT 4507 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| || ||||| |||||||| || ||||| || || |||||| Sbjct 4506 ACGATCGAGAACGTCAAAACGAAAATTCAAGACAAAGAGGGTATCCCACCCGATCAGCAA 4447 Query 178044 CGACTTATCTTCGCCGG 178060 || | || ||||| || Sbjct 4446 CGTTTGATTTTCGCAGG 4430 >seq391 Length=62077 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || || || ||||||||| | || |||||| || || Sbjct 22371 CAAATTTTCGTCAAAACTTTGACGGGCAAGACGATCACCTTGGAAGTGGAACCGTCCGAT 22430 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| |||||||| |||||||| || || |||||||| || ||| Sbjct 22431 ACCATCGAGAACGTAAAAACGAAGATTCAAGACAAAGAGGGCATACCTCCGGATCAACAA 22490 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || |||||||| || Sbjct 22491 CGTTTAATATTCGCCGGTAA 22510 Score = 111 bits (122), Expect = 4e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || |||||||| || || || || || ||| || ||| Sbjct 23632 CAAATTTTTGTCAAAACGCTGACGGGAAAAACTATAACGCTGGAAGTCGAACCGTCGGAC 23691 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||| |||||||| |||||| || |||||||||||||| || || || || ||||| Sbjct 23692 ACGATCGAAAACGTCAAGACAAAA-ATCCAGGACAAAGAAGGCATTCCACCAGATCAGCA 23750 Query 178043 ACGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 23751 ACGTTTAATCTTCGCTGG 23768 Score = 104 bits (114), Expect = 6e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | ||||||||||||||||| | || || ||| || ||| Sbjct 17595 CAGATTTTCGTGAAAACGTTGACAGGAAAAACGATCACGTTAGAAGTCGAACCTTCGGAC 17654 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || ||||| || || ||| ||||| ||||| ||||| ||||| || || || || Sbjct 17655 ACGATTGAAAACGTGAAGACTAAA-ATTCAAGACAAGGAAGGTATCCCGCCCGATCAACA 17713 Query 178043 ACGACTTATCTTCGCCGGAAA 178063 | || | || |||||||| || Sbjct 17714 AAGATTGATTTTCGCCGGTAA 17734 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || || || || |||||||| ||||| || || || Sbjct 22050 CAAATTTTTGTCAAGACTTTGACTGGCAAGACTATCACCCTTGAGGTTGAGCCGTCGGAT 22109 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||||||||||| ||||||||||||||||| || || ||| Sbjct 22110 ACGATTGAGAATGTTAAAACCAAGATTCAGGATAAAGAAGGAATCCCTCCAGATCAACAA 22169 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || || ||||| || || Sbjct 22170 CGCCTGATTTTCGCTGGTAA 22189 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || |||||||| | || || ||| || ||| Sbjct 24274 CAAATTTTCGTCAAAACGTTAACGGGCAAGACGATCACGTTGGAAGTAGAACCGTCCGAC 24333 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||| || || || || || ||| Sbjct 24334 ACAATTGAAAATGTTAAAACGAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAA 24393 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || |||||||| || || Sbjct 24394 CGGCTGATCTTCGCTGGTAA 24413 >seq4826 Length=16944 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178021 AAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAA 178080 |||| ||||||||||| || ||||| || || |||||||| |||||| | ||||| ||| Sbjct 6948 AAGGCATCCCTCCGGATCAACAACGTCTAATTTTCGCCGGTAAACAGTTGGAAGACGGAC 6889 Query 178081 GGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 | || || ||||||| ||| | ||||| || || || || ||| | || ||| || Sbjct 6888 GTACGCTATCCGATTACAACATTCAAAAGGAGTCGACTCTTCATTTGGTGTTGCGA 6833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202766703981178