Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 3e-14 seq58792 89.7 1e-12 seq31269 89.7 1e-12 seq18022 89.7 1e-12 seq15142 89.7 1e-12 seq3756 89.7 1e-12 seq3129 89.7 1e-12 seq2836 89.7 1e-12 seq2467 89.7 1e-12 seq2301 89.7 1e-12 seq1063 89.7 1e-12 seq943 89.7 1e-12 seq636 89.7 1e-12 seq635 89.7 1e-12 seq25 89.7 1e-12 seq46781 87.8 4e-12 seq11223 87.8 4e-12 seq357 87.8 4e-12 seq307 87.8 4e-12 seq288 87.8 4e-12 seq68458 86.0 1e-11 seq66911 86.0 1e-11 >seq11 Length=238767 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 |||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||| | Sbjct 117101 AAAACGTCTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCG 117042 Query 165761 GGTTCGAGCCCC 165772 |||||||||||| Sbjct 117041 GGTTCGAGCCCC 117030 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 120212 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 120153 Query 165770 CCC 165772 ||| Sbjct 120152 CCC 120150 >seq58792 Length=746 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 402 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 343 Query 165769 CCCC 165772 |||| Sbjct 342 CCCC 339 >seq31269 Length=1145 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 568 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 509 Query 165769 CCCC 165772 |||| Sbjct 508 CCCC 505 >seq18022 Length=1736 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 1724 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 1665 Query 165769 CCCC 165772 |||| Sbjct 1664 CCCC 1661 >seq15142 Length=2093 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||| | Sbjct 20 AAAACATCTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCG 79 Query 165761 GGTTCGAGCCCC 165772 |||||||||||| Sbjct 80 GGTTCGAGCCCC 91 >seq3756 Length=16100 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||| | Sbjct 72 AAAACATCTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCG 13 Query 165761 GGTTCGAGCCCC 165772 |||||||||||| Sbjct 12 GGTTCGAGCCCC 1 >seq3129 Length=20334 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||| | Sbjct 16823 AAAACATCTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCG 16764 Query 165761 GGTTCGAGCCCC 165772 |||||||||||| Sbjct 16763 GGTTCGAGCCCC 16752 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||| | Sbjct 20315 AAAACATCTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCG 20256 Query 165761 GGTTCGAGCCCC 165772 |||||||||||| Sbjct 20255 GGTTCGAGCCCC 20244 >seq2836 Length=24122 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||| | Sbjct 435 AAAACATGTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCG 376 Query 165761 GGTTCGAGCCCC 165772 |||||||||||| Sbjct 375 GGTTCGAGCCCC 364 >seq2467 Length=46241 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 18981 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 18922 Query 165769 CCCC 165772 |||| Sbjct 18921 CCCC 18918 >seq2301 Length=20342 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| Sbjct 11271 GCTCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTC 11212 Query 165766 GAGCCCC 165772 ||||||| Sbjct 11211 GAGCCCC 11205 >seq1063 Length=46782 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| Sbjct 39869 GCTCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTC 39810 Query 165766 GAGCCCC 165772 ||||||| Sbjct 39809 GAGCCCC 39803 >seq943 Length=49218 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||| | Sbjct 12334 AAAACATCTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCG 12275 Query 165761 GGTTCGAGCCCC 165772 |||||||||||| Sbjct 12274 GGTTCGAGCCCC 12263 >seq636 Length=73428 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| Sbjct 48476 GCTCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTC 48417 Query 165766 GAGCCCC 165772 ||||||| Sbjct 48416 GAGCCCC 48410 >seq635 Length=56764 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 31429 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 31370 Query 165769 CCCC 165772 |||| Sbjct 31369 CCCC 31366 >seq25 Length=201306 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 77130 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 77071 Query 165769 CCCC 165772 |||| Sbjct 77070 CCCC 77067 >seq46781 Length=874 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 299 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 358 Query 165770 CCC 165772 ||| Sbjct 359 CCC 361 >seq11223 Length=3321 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 1051 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1110 Query 165770 CCC 165772 ||| Sbjct 1111 CCC 1113 >seq357 Length=96098 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 67912 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 67971 Query 165770 CCC 165772 ||| Sbjct 67972 CCC 67974 >seq307 Length=85398 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 82864 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 82923 Query 165770 CCC 165772 ||| Sbjct 82924 CCC 82926 >seq288 Length=72001 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 20443 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 20384 Query 165770 CCC 165772 ||| Sbjct 20383 CCC 20381 >seq68458 Length=668 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/73 (86%), Gaps = 3/73 (4%) Strand=Plus/Minus Query 165703 AACGCTTGCCCGTC---TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGT 165759 |||| |||||| | |||||||||||||||||| ||||||| |||||||||| |||| Sbjct 580 AACGGCTGCCCGCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGC 521 Query 165760 GGGTTCGAGCCCC 165772 ||||||||||||| Sbjct 520 GGGTTCGAGCCCC 508 >seq66911 Length=679 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/73 (86%), Gaps = 3/73 (4%) Strand=Plus/Minus Query 165703 AACGCTTGCCCGTC---TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGT 165759 |||| |||||| | |||||||||||||||||| ||||||| |||||||||| |||| Sbjct 86 AACGGCTGCCCGCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGC 27 Query 165760 GGGTTCGAGCCCC 165772 ||||||||||||| Sbjct 26 GGGTTCGAGCCCC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056461547480750