Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2970 100 2e-16 seq3991 86.0 5e-12 seq1539 84.2 2e-11 >seq2970 Length=24236 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| |||| || |||||||| ||| ||| ||| | Sbjct 14268 AATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14327 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || || | | || | ||| |||||| || || || ||| | || ||||| Sbjct 14328 GGATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCA 14387 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | | |||||||| || |||||| |||||||| | ||| ||||||||||||| Sbjct 14388 GCAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAA 14447 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||| || || || ||| |||| || || | ||||||| Sbjct 14448 CATCCAAAAGGAGTCAACCCTCCACTTGGTTTTGCGCCTTAGAGGAGG 14495 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| ||||| || |||||||| ||| || || | Sbjct 7872 AATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTAC 7931 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| ||| || | || || |||||| | || ||||| Sbjct 7932 TGACACAATTGATAATATTAAAGCAAAGATCACTGACAAGGAAGGTATTCCGACTGATCA 7991 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | || ||||||||||| |||||||| |||||| | |||| ||||||||||||| Sbjct 7992 ACAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8051 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || ||||| | || || ||| |||| || || Sbjct 8052 CATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCG 8087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||||||| | || ||||||||||| |||||||| |||||| | |||| |||||||| Sbjct 8215 GATCAACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGAT 8274 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || || ||||| | || |||||| |||| || || Sbjct 8275 TACAACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 8315 >seq3991 Length=17808 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| |||| || ||||| || ||| ||| ||| | Sbjct 12061 AATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTC 12002 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || || | | || | ||| ||||| || || || ||| | || || || Sbjct 12001 TGATACTGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCA 11942 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | || || ||||| || |||||| |||||||| | |||| ||||||||||||| Sbjct 11941 GCAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACAA 11882 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || ||||| || || || ||| |||| Sbjct 11881 CATCCAAAAGGAGTCAACCCTCCACTTGGT 11852 >seq1539 Length=61058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| ||| | || ||||||||||| |||||||| |||||| | ||| |||||||| Sbjct 9233 GATCAGCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGAT 9292 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || || ||||| | || |||||| |||| || || Sbjct 9293 TACAACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427811224818875