Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq10184 109 5e-19 seq3991 84.2 2e-11 seq9051 82.4 6e-11 seq2970 82.4 6e-11 >seq10184 Length=3342 Score = 109 bits (120), Expect = 5e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 20991 TGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGT 21050 |||||||| ||||| |||||||| | |||||||||| |||||||| || | |||||| Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 21051 CTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACA 21110 | |||||||||| || | |||||||||||| |||||| ||||| | | || Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 21111 GTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATT 21170 || || | |||| |||| ||| || ||||| ||||| | || || || || ||| Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 21171 TGCAT 21175 ||||| Sbjct 968 TGCAT 972 >seq3991 Length=17808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/235 (68%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGC---AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATA 21001 |||||| |||| | || | || |||| || | || ||||||||||| ||||| || Sbjct 11827 GTTTCCACCTCCCCTGAGGCGCAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTA 11886 Query 21002 GTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 || |||| ||| || | || |||| ||||| || ||| |||| || | |||||||| Sbjct 11887 ATCGGCCAAAGTTCGGCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGCTGGTC 11946 Query 21062 CACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGG 21121 | || | || |||||||| ||| || ||||| | | | ||||||||| Sbjct 11947 CGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTCACATTGTCTACAGTATCAGAACT 12006 Query 21122 CTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || ||| | ||| || || || || || | ||||| || || ||||||||| Sbjct 12007 TTCACATTCTAGGGTTATAGTTTTTCCAGTCAGAGTTTTTACGAAAATTTGCATT 12061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| ||| | || ||||||||||| ||||| || || |||| || | | ||||| Sbjct 12079 CACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAATCGGCCAAAGTACGACCATCCTC 12138 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 || ||||| || ||| |||| | | || |||||| || | || |||||||| Sbjct 12139 GAGTTGTTTTCCTGCAAAAATCAACCGTTGTTGGTCCGGTGGGATACCCTCCTTGTCCTG 12198 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||| || ||||| | | | || |||||| || ||||| ||| ||||| || Sbjct 12199 GATTTTCGCCTTCACATTGTCTACGGTATCAGAACTTTCGCATTCCAAGGTTATGGTTTT 12258 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || |||| ||||| ||||| || |||||| Sbjct 12259 TCCCGTTAGGGTTTTCACAAAAATCTGCATT 12289 >seq9051 Length=5414 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||||| | ||||| ||||||||||||||| ||||| || |||| Sbjct 4163 TTCCTCCGCGCAGACGCAGCACGAGATGCAGAGTGGACTCCTTTTGGATGTTGTAATCCG 4222 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCA 21041 | ||||| || ||||||| || || || || ||| Sbjct 4223 CGAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCA 4257 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||||| | ||||| ||||||||||||||| ||||| || |||| Sbjct 4488 TTCCTCCGCGCAGACGCAGCACGAGATGCAGAGTGGACTCCTTTTGGATGTTGTAATCCG 4547 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAAT 21046 | || || || ||||||| || ||||| || || |||| Sbjct 4548 CGAGTGTACGGCCGTCCTCAAGTTGTTTTCCGGCGAAAAT 4587 >seq2970 Length=24236 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 20984 CTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATA 21043 ||||||||| ||||| || || |||| ||| || | || || || ||||| |||||| | Sbjct 8064 CTCCTTTTGGATGTTGTAATCGGCCAAAGTTCGGCCATCTTCGAGTTGTTTTCCCGCAAA 8005 Query 21044 AATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTG 21103 || || | || || || || | ||||||||||| | ||||||| ||| | | Sbjct 8004 GATCAGGCGTTGTTGATCAGTCGGAATACCTTCCTTGTCAGTGATCTTTGCTTTAATATT 7945 Query 21104 GCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 | | || ||| ||| |||| ||| ||||| || ||||| || ||||| || Sbjct 7944 ATCAATTGTGTCAGTACTCTCGACCTCCAGGGTTATGGTTTTCCCGGTCAAAGTTTTCAC 7885 Query 21164 AAATATTTGCATT 21176 ||| ||||||||| Sbjct 7884 AAAAATTTGCATT 7872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421741869800900