Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2970 109 5e-19 seq3991 95.1 1e-14 seq1539 87.8 1e-12 >seq2970 Length=24236 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| |||| || |||||||| ||| ||| ||| | Sbjct 14268 AATGCAAATTTTCGTGAAAACTCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14327 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || || | | || | ||| |||||| || || || ||| | || ||||| Sbjct 14328 GGATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCA 14387 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | |||||||| || ||||||||||||||| | ||| ||||||||||||| Sbjct 14388 GCAACGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGCCGTACTTTGGCCGATTACAA 14447 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || || || ||| |||| || || | ||||||| Sbjct 14448 CATCCAAAAGGAGTCAACCCTCCACTTGGTTTTGCGCCTTAGAGGAGG 14495 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| ||||| || |||||||| ||| || || | Sbjct 7872 AATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTAC 7931 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || ||| || | || || |||||| | || ||||| Sbjct 7932 TGACACAATTGATAATATTAAAGCAAAGATCACTGACAAGGAAGGTATTCCGACTGATCA 7991 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | || ||||||||||| |||||| | |||||| | |||| ||||||||||||| Sbjct 7992 ACAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACAA 8051 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || |||||||| | || || ||| |||| || || Sbjct 8052 CATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCG 8087 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||||||| | || ||||||||||| |||||| | |||||| | |||| |||||||| Sbjct 8215 GATCAACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGAT 8274 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| || |||||||| | || |||||| |||| || || Sbjct 8275 TACAACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 8315 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | ||||| |||| || |||||||| ||| ||| ||| | Sbjct 14040 AATGCAGATTTTTGTGAAAACCCTGACCGGAAAAACCATAACCCTGGAATGTGAAAGTTC 14099 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || || | | || | ||| |||||| || || || ||| | || ||||| Sbjct 14100 GGATACTGTAGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCGGATCA 14159 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || || ||||| || ||||||||||||||| | ||| ||||||| ||||| Sbjct 14160 GCAACGGCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGACTACAA 14219 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243 || ||||| ||||| || || ||| |||| Sbjct 14220 CATCCAAAAAGAATCAACCCTCCACTTGGT 14249 >seq3991 Length=17808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| |||| || ||||| || ||| ||| ||| | Sbjct 12061 AATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTC 12002 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || || | | || | ||| ||||| || || || ||| | || || || Sbjct 12001 TGATACTGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCA 11942 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || || ||||| || ||||||||||||||| | |||| ||||||||||||| Sbjct 11941 GCAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACAA 11882 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243 || |||||||| || || || ||| |||| Sbjct 11881 CATCCAAAAGGAGTCAACCCTCCACTTGGT 11852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| ||| | || ||||||||||| ||||||||||||||| | ||| ||||||| Sbjct 17142 GATCAGCAACGCCTGATCTTTGCGGGGAAACAATTGGAAGATGGCCGTACTTTGGCCGAC 17083 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| ||||| || | || ||||| |||| || || Sbjct 17082 TACAATATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17042 >seq1539 Length=61058 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| ||| | || |||||||| || ||||||||||||||| | ||| |||||||| Sbjct 9461 GATCAGCAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGAT 9520 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| || |||||||| | || |||||| |||| || || Sbjct 9521 TACAACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| ||| | || ||||||||||| |||||| | |||||| | ||| |||||||| Sbjct 9233 GATCAGCAACGCCTCATCTTTGCGGGAAAACAACTCGAAGATGGCCGCACTTTGGCCGAT 9292 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| || |||||||| | || |||||| |||| || || Sbjct 9293 TACAACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410293512942350