Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3991 114 2e-20 seq2970 109 8e-19 seq1539 109 8e-19 >seq3991 Length=17808 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || |||| || || || || ||||||||||| |||| |||| Sbjct 12061 AATGCAAATTTTCGTAAAAACTCTGACTGGAAAAACTATAACCCTAGAATGTGAAAGTTC 12002 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| | ||| | || |||||| || || || || ||||| || || || || Sbjct 12001 TGATACTGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCA 11942 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || |||||||||||||||||||| || ||| | ||||| || | ||||| || Sbjct 11941 GCAACGCCTGATTTTTGCAGGAAAACAATTGGAAGATGGCCGAACTTTGGCCGATTACAA 11882 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || ||||| | || |||||| Sbjct 11881 CATCCAAAAGGAGTCAACCCTCCACTTGGTT 11851 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || ||||| || ||||| ||||| | || ||| Sbjct 12289 AATGCAGATTTTTGTGAAAACCCTAACGGGAAAAACCATAACCTTGGAATGCGAAAGTTC 12230 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| | ||| | || |||||| || || || || ||||| ||||| || || Sbjct 12229 TGATACCGTAGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGTATCCCACCGGACCA 12170 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| || | |||||||||||||||||| | |||||| |||| || || | ||||| || Sbjct 12169 ACAACGGTTGATTTTTGCAGGAAAACAACTCGAGGATGGTCGTACTTTGGCCGATTACAA 12110 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 || ||||| || ||||| | |||||||| || || Sbjct 12109 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCG 12074 Score = 109 bits (120), Expect = 8e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || | || || ||||| ||||| | ||| | || |||| Sbjct 17485 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 17426 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| |||| | ||| || || ||||| || || ||||| |||||| Sbjct 17425 -TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATACCGACTGATC 17367 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | || || ||||| || |||||| |||| ||| | || || || | || || | Sbjct 17366 AACAACGCCTGATCTTTGCGGGGAAACAACTAGAAGATGGCCGCACTTTGGCCGACTACA 17307 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 |||| |||||||| | || | ||||||||||| || Sbjct 17306 ATATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17270 Score = 105 bits (116), Expect = 1e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || | || || ||||| ||||| | ||| | || |||| Sbjct 17257 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 17198 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| |||| | ||| || || ||||| || || || ||| |||||| Sbjct 17197 -TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATC 17139 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||| | || || ||||| || |||||||| || ||| | || || || | || || | Sbjct 17138 AGCAACGCCTGATCTTTGCGGGGAAACAATTGGAAGATGGCCGTACTTTGGCCGACTACA 17079 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 |||| |||||||| | || | ||||||||||| || Sbjct 17078 ATATCCAAAAAGAGGCCACCCTTCATTTGGTTTTGCG 17042 >seq2970 Length=24236 Score = 109 bits (120), Expect = 8e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || | || || ||||| ||||| | ||| | || |||| Sbjct 7644 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 7703 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| |||| | ||| || || || || || || ||||| |||||| Sbjct 7704 -TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATC 7762 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | || || ||||| || |||||| | || ||| | || || |||| ||||| | Sbjct 7763 AACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGCACTTTAGCCGATTACA 7822 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 | || |||||||| |||| | ||||||||||| || Sbjct 7823 ACATCCAAAAAGAGGCAACCCTTCATTTGGTTTTGCG 7859 Score = 109 bits (120), Expect = 8e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || | || || ||||| ||||| | ||| | || | Sbjct 7872 AATGCAAATTTTTGTGAAAACTTTGACCGGGAAAACCATAACCCTGGAGGTCGAGAGTAC 7931 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| |||||| |||| ||||| || || || || || |||||||| || |||||| Sbjct 7932 TGACACAATTGATAATATTAAAGCA-AAGATCACTGACAAGGAAGGTATTCCGACTGATC 7990 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | || || ||||| ||||||||| | || ||| | ||||| || | ||||| | Sbjct 7991 AACAACGCCTGATCTTTGCGGGAAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACA 8050 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 | || ||||| || |||| | || |||||||| || Sbjct 8051 ACATCCAAAAGGAGGCAACCCTCCACTTGGTTTTGCG 8087 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| || || || || ||||| ||||| ||||| ||| |||| ||||||||||||||| Sbjct 14125 AAAATCCAGGACAAGGAGGGTATCCCACCGGATCAGCAACGGCTGATTTTTGCAGGAAAA 14184 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| | || || || | || || || || |||||||||||||| | || Sbjct 14185 CAATTGGAAGATGGCCGCACTTTGGCCGACTACAACATCCAAAAAGAATCAACCCTCCAC 14244 Query 124743 TTGGTT 124748 |||||| Sbjct 14245 TTGGTT 14250 Score = 100 bits (110), Expect = 4e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || | || || ||||| ||||| | ||| | || |||| Sbjct 8100 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 8159 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| |||| | ||| || || || || || || ||||| |||||| Sbjct 8160 -TGATACCATTGATAATGTGAAAGCAAAGATCACTGACAAGGAGGGCATACCGACTGATC 8218 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | || || ||||| || |||||| | || ||| | ||||| || | ||||| | Sbjct 8219 AACAACGCCTGATCTTTGCGGGGAAACAACTCGAAGATGGCCGAACTTTGGCCGATTACA 8278 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 | || ||||| || |||| | || |||||||| || Sbjct 8279 ACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 8315 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| || || || || ||||| ||||| ||||| ||| | | || |||||||||||| Sbjct 14353 AAAATCCAGGACAAGGAGGGTATCCCACCGGATCAGCAACGTTTGATCTTTGCAGGAAAA 14412 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| | || || || | ||||| || || ||||| || ||||| | || Sbjct 14413 CAATTGGAAGATGGCCGTACTTTGGCCGATTACAACATCCAAAAGGAGTCAACCCTCCAC 14472 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| || | |||| ||| Sbjct 14473 TTGGTTTTGCGCCTTAGAGGAGGT 14496 >seq1539 Length=61058 Score = 109 bits (120), Expect = 8e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || | || || ||||| ||||| | ||| | || |||| Sbjct 9346 AATGCAAATTTTTGTGAAAACTTTGACCGGAAAAACCATAACCTTGGAGGTCGAGAGCAG 9405 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| |||| | ||| || || ||||| || || || ||| |||||| Sbjct 9406 -TGATACCATTGATAATGTGAAAGCAAAGATCACTGATAAGGAGGGCATTCCAACTGATC 9464 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||| | || || ||||||||||||||||| || ||| | || || || | ||||| | Sbjct 9465 AGCAACGCCTCATCTTTGCAGGAAAACAATTGGAAGATGGCCGCACTTTGGCCGATTACA 9524 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 | || ||||| || |||| | || |||||||| || Sbjct 9525 ACATCCAAAAGGAGGCAACCCTTCACTTGGTTTTGCG 9561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754506722320000