Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2067 131 2e-25 seq10184 127 2e-24 seq8832 118 1e-21 seq1539 98.7 1e-15 seq2181 86.0 7e-12 seq6969 84.2 2e-11 seq5646 84.2 2e-11 seq2554 82.4 9e-11 seq2432 82.4 9e-11 seq110 82.4 9e-11 >seq2067 Length=34267 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 ||||| ||||| || ||||| || || |||| || || || || || ||||| |||||| Sbjct 29580 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGT 29639 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 ||||||||||| | ||| | || |||||||||| ||| || || | || |||| Sbjct 29640 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACT 29699 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 || ||| |||| |||||||| | ||||| || || || || |||||||| || |||||| Sbjct 29700 GTATCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 29759 Query 43179 TGCAT 43183 ||||| Sbjct 29760 TGCAT 29764 >seq10184 Length=3342 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 ||||| ||||| || ||||| || || |||| || || || || || ||||| || ||| Sbjct 788 TGAATGTTGTAGTCGGCCAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATAAGT 847 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 ||||||||||| | ||| | || ||||||||| ||| || || | || ||||| Sbjct 848 CGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCCACC 907 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 |||||| |||| |||||||| | ||||| || || || || || ||||| || |||||| Sbjct 908 GTGTCGTTCGACTCCACATCCATGGTGATCGTCTTCCCGGTCAGTGTCTTCACGAAGATT 967 Query 43179 TGCAT 43183 ||||| Sbjct 968 TGCAT 972 >seq8832 Length=4481 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 ||||| ||||| || ||||| || || | || || || || || || ||||| |||||| Sbjct 602 TGAATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATGAGT 661 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 || |||||||| | ||| | || |||||| ||| ||| || || | || ||||| Sbjct 662 CGTTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCCACC 721 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 |||||| |||| |||| || | ||||| || || || || |||||||| || |||||| Sbjct 722 GTGTCGTTCGACTCCATGTCCAGTGTGATCGTCTTCCCGGTCAGCGTCTTCACGAAGATT 781 Query 43179 TGCAT 43183 ||||| Sbjct 782 TGCAT 786 >seq1539 Length=61058 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | |||||||||||||| | ||| ||| ||||| |||||||| || || Sbjct 9802 TCCTCCCCTGAGGCGCAACACCAAATGAAGGGTGGCCTCTTTTTGGATATTGTAGTCGGC 9743 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || || || || || || || ||||| || ||||| || | || Sbjct 9742 CAAAGTGCGGCCATCTTCGAGTTGTTTTCCCGCAAAGATGAGGCGTTGCTGATCAGTTGG 9683 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||| || |||| ||| ||| | | | | || || || || || Sbjct 9682 AATGCCCTCCTTATCAGTGATCTTTGCTTTCACATTATCAATGGTATCACTGCTCTCGAC 9623 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || |||||||| || || || || || || || ||||||||| Sbjct 9622 CTCCAGAGTTATGGTTTTTCCGGTCAGGGTTTTCACGAAAATTTGCATT 9574 >seq2181 Length=27260 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| | | |||||| |||||| |||||||| |||||||||||| |||| Sbjct 3205 AAAAATTAACTCCCAGACCGGGAATTGAACCCGGGTCTCCCACGTGACAGGCGGGGATAC 3264 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | |||||||||||| | ||||||| Sbjct 3265 TAACCACTATACTATCTGGGATTGA 3289 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| | | |||||| |||||| |||||||| |||||||||||| |||| Sbjct 19738 AAAAATTAACTCCCAGACCGGGAATTGAACCCGGGTCTCCCACGTGACAGGCGGGGATAC 19797 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | |||||||||||| | ||||||| Sbjct 19798 TAACCACTATACTATCTGGGATTGA 19822 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| || |||| | | |||||| |||||| |||||||| |||||||||||| | Sbjct 3038 ATTAAAAAATTACTCCCAGACCGGGAATTGAACCCGGGTCTCCCACGTGACAGGCGGGGA 2979 Query 60114 TACTCACCACTATACTACCGAGGATT 60139 |||| |||||||||||| | ||||| Sbjct 2978 TACTAACCACTATACTATCTGGGATT 2953 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| | | |||||| |||||| ||||| || |||||||||||| |||| Sbjct 26624 AAAAATTAACTCCCAGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGGGATAC 26565 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | |||||||||||| | ||||||| Sbjct 26564 TAACCACTATACTATCTGGGATTGA 26540 >seq6969 Length=8432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||||||| |||| | | ||||||||||||| |||||| | ||||||||||| | Sbjct 1284 ATAAAAAATTTACTCCCAGTCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGA 1225 Query 60114 TACTCACCACTATACTACCGAGGATT 60139 |||| |||||||||||| | ||||| Sbjct 1224 TACTAACCACTATACTAACTGGGATT 1199 >seq5646 Length=12078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||||||| |||| | | ||||||||||||| |||||| | ||||||||||| | Sbjct 2450 ATAAAAAATTTACTCCCAGTCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGA 2391 Query 60114 TACTCACCACTATACTACCGAGGATT 60139 |||| |||||||||||| | ||||| Sbjct 2390 TACTAACCACTATACTAACTGGGATT 2365 >seq2554 Length=23622 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| | | |||||| |||||| |||||||| |||||||||||| |||| Sbjct 4123 AAAAAATCACTCCCAGACCGGGAATTGAACCCGGGTCTCCCACGTGACAGGCGGGGATAC 4064 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | |||||||||||| | ||||||| Sbjct 4063 TAACCACTATACTATCTGGGATTGA 4039 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| | | |||||| |||||| |||||||| |||||||||||| |||| Sbjct 4415 AAAAATAAACTCCCAGACCGGGAATTGAACCCGGGTCTCCCACGTGACAGGCGGGGATAC 4474 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | |||||||||||| | ||||||| Sbjct 4475 TAACCACTATACTATCTGGGATTGA 4499 >seq2432 Length=29013 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| |||| | | ||||||||||||| |||||| | ||||||||||| |||| Sbjct 13231 AAAAATTTACTCCCAGTCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 13172 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||| | ||||| Sbjct 13171 TAACCACTATACTAACTGGGATT 13149 >seq110 Length=156423 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/97 (79%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 60043 AATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTG 60102 ||| || ||||| ||||| || |||| | | ||||||||||||| |||||| | |||| Sbjct 70873 AATAAAAGTTTA--AAAAAATTACTCCCAGTCCGGGAATCGAACCCGGGTCTCGCACGTG 70930 Query 60103 ACAGGCGGACATACTCACCACTATACTACCGAGGATT 60139 ||||||| ||||| |||||||||||| | ||||| Sbjct 70931 ACAGGCGCGGATACTAACCACTATACTAACTGGGATT 70967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571099075447000